{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,19]],"date-time":"2026-03-19T19:32:17Z","timestamp":1773948737472,"version":"3.50.1"},"reference-count":56,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2025,4,16]],"date-time":"2025-04-16T00:00:00Z","timestamp":1744761600000},"content-version":"vor","delay-in-days":1,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,7,11]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Chickens are a crucial source of protein for humans and a popular model animal for bird research. Despite the emergence of imputation as a reliable genotyping strategy for large populations, the lack of a high-quality chicken reference panel has hindered progress in chicken genome research. To address this, here we introduce the first phase of the 100K Global Chicken Reference Panel (100K GCRP). Currently, two panels are available: a comprehensive mix panel (CMP) for domestication diversity research and a commercial breed panel (CBP) for breeding broilers specifically. Evaluation of genotype imputation quality showed that CMP had the highest imputation accuracy compared to imputation using existing chicken panels in Animal-SNPAtlas and Animal Genotype Imputation Database (AGIDB), whereas CBP performed stably in the imputation of commercial populations. Additionally, we found that genome-wide association studies using GCRP-imputed data, whether on simulated or real phenotypes, exhibited greater statistical power. In conclusion, our study indicates that the GCRP effectively fills the gap in high-quality reference panels for chickens, providing an effective imputation platform for future genetic and breeding research. The project includes 11,951 samples and provides services for various applications on its website at http:\/\/farmrefpanel.com\/GCRP\/#\/.<\/jats:p>","DOI":"10.1093\/gpbjnl\/qzaf032","type":"journal-article","created":{"date-parts":[[2025,4,15]],"date-time":"2025-04-15T23:30:57Z","timestamp":1744759857000},"source":"Crossref","is-referenced-by-count":5,"title":["GCRP: Integrated Global Chicken Reference Panel from 11,951 Chicken Genomes"],"prefix":"10.1093","volume":"23","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9362-3834","authenticated-orcid":false,"suffix":"(\u6731\u8fea)","given":"Di","family":"Zhu","sequence":"first","affiliation":[{"name":"State Key Laboratory of Animal Biotech Breeding, College of Biological Sciences, China Agricultural University , Beijing 100193,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4463-4075","authenticated-orcid":false,"suffix":"(\u738b\u5b87\u5360)","given":"Yuzhan","family":"Wang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Animal Biotech Breeding, College of Biological Sciences, China Agricultural University , Beijing 100193,","place":["China"]},{"name":"National Research Facility for Phenotypic and Genotypic Analysis of Model Animals (Beijing), China Agricultural University , Beijing 100193,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0009-0004-3013-6766","authenticated-orcid":false,"suffix":"(\u77bf\u6d69)","given":"Hao","family":"Qu","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Swine and Poultry Breeding Industry, Guangdong Key Laboratory of Animal Breeding and Nutrition, Institute of Animal Science, Guangdong Academy of Agricultural Sciences , Guangzhou 510640,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7031-4211","authenticated-orcid":false,"suffix":"(\u51af\u6625\u521a)","given":"Chungang","family":"Feng","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, Nanjing Agricultural University , Nanjing 210095,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6331-6876","authenticated-orcid":false,"suffix":"(\u5f20\u6167)","given":"Hui","family":"Zhang","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, Northeast Agricultural University , Harbin 150030,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4487-2682","authenticated-orcid":false,"suffix":"(\u76db\u54f2\u96c5)","given":"Zheya","family":"Sheng","sequence":"additional","affiliation":[{"name":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2914-6818","authenticated-orcid":false,"suffix":"(\u59dc\u8fd0\u826f)","given":"Yunliang","family":"Jiang","sequence":"additional","affiliation":[{"name":"Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Shandong Agricultural University , Taian 271018,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3934-3820","authenticated-orcid":false,"suffix":"(\u8042\u5e86\u534e)","given":"Qinghua","family":"Nie","sequence":"additional","affiliation":[{"name":"Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University , Guangzhou 510642,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0009-0005-3176-0568","authenticated-orcid":false,"suffix":"(\u891a\u7d20\u4e54)","given":"Suqiao","family":"Chu","sequence":"additional","affiliation":[{"name":"Shijiazhuang Animal Husbandry Technology Promotion Station , Shijiazhuang 050000,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0109-3013","authenticated-orcid":false,"suffix":"(\u8212\u9f0e\u94ed)","given":"Dingming","family":"Shu","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Swine and Poultry Breeding Industry, Guangdong Key Laboratory of Animal Breeding and Nutrition, Institute of Animal Science, Guangdong Academy of Agricultural Sciences , Guangzhou 510640,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0009-0005-9538-7539","authenticated-orcid":false,"suffix":"(\u59dc\u81ea\u7434)","given":"Ziqin","family":"Jiang","sequence":"additional","affiliation":[{"name":"Wen\u2019s Nanfang Poultry Breeding Co., Ltd. , Yunfu 527400,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0009-0006-1574-0994","authenticated-orcid":false,"suffix":"(\u5f20\u5fb7\u7965)","given":"Dexiang","family":"Zhang","sequence":"additional","affiliation":[{"name":"Wen\u2019s Nanfang Poultry Breeding Co., Ltd. , Yunfu 527400,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1103-3679","authenticated-orcid":false,"suffix":"(\u623f\u7075\u662d)","given":"Lingzhao","family":"Fang","sequence":"additional","affiliation":[{"name":"Center for Quantitative Genetics and Genomics, Aarhus University , 8000 Aarhus,","place":["Denmark"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6282-5559","authenticated-orcid":false,"suffix":"(\u674e\u8f89)","given":"Hui","family":"Li","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, Northeast Agricultural University , Harbin 150030,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0009-0007-8633-0041","authenticated-orcid":false,"suffix":"(\u5f90\u632f\u5f3a)","given":"Zhenqiang","family":"Xu","sequence":"additional","affiliation":[{"name":"Wen\u2019s Nanfang Poultry Breeding Co., Ltd. , Yunfu 527400,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0076-3476","authenticated-orcid":false,"suffix":"(\u8d75\u6bc5\u5f3a)","given":"Yiqiang","family":"Zhao","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Animal Biotech Breeding, College of Biological Sciences, China Agricultural University , Beijing 100193,","place":["China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3474-7957","authenticated-orcid":false,"suffix":"(\u738b\u5b87\u54f2)","given":"Yuzhe","family":"Wang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Animal Biotech Breeding, College of Biological Sciences, China Agricultural University , Beijing 100193,","place":["China"]},{"name":"National Research Facility for Phenotypic and Genotypic Analysis of Model Animals (Beijing), China Agricultural University , Beijing 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