{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,16]],"date-time":"2026-01-16T17:39:17Z","timestamp":1768585157927,"version":"3.49.0"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2025,6,25]],"date-time":"2025-06-25T00:00:00Z","timestamp":1750809600000},"content-version":"vor","delay-in-days":24,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100012226","name":"Fundamental Research Funds for the Central Universities","doi-asserted-by":"publisher","award":["2024IAIS-QN020"],"award-info":[{"award-number":["2024IAIS-QN020"]}],"id":[{"id":"10.13039\/501100012226","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012226","name":"Fundamental Research Funds for the Central Universities","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100012226","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002402","name":"Sun Yat-sen University","doi-asserted-by":"publisher","award":["22lglj08"],"award-info":[{"award-number":["22lglj08"]}],"id":[{"id":"10.13039\/501100002402","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,7,11]]},"DOI":"10.1093\/gpbjnl\/qzaf059","type":"journal-article","created":{"date-parts":[[2025,6,25]],"date-time":"2025-06-25T11:27:06Z","timestamp":1750850826000},"source":"Crossref","is-referenced-by-count":1,"title":["Foundation Model: A New Era for Plant Single-cell Genomics"],"prefix":"10.1093","volume":"23","author":[{"ORCID":"https:\/\/orcid.org\/0009-0003-6470-0671","authenticated-orcid":false,"given":"Yuansong","family":"Zeng","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6782-2813","authenticated-orcid":false,"given":"Yuedong","family":"Yang","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2025,6,25]]},"reference":[{"key":"2025121705413628300_qzaf059-B1","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1038\/s41576-019-0093-7","article-title":"Integrative single-cell analysis","volume":"20","author":"Stuart","year":"2019","journal-title":"Nat Rev Genet"},{"key":"2025121705413628300_qzaf059-B2","doi-asserted-by":"crossref","first-page":"616","DOI":"10.1038\/s41586-023-06139-9","article-title":"Transfer learning enables predictions in network biology","volume":"618","author":"Theodoris","year":"2023","journal-title":"Nature"},{"key":"2025121705413628300_qzaf059-B3","doi-asserted-by":"crossref","first-page":"1470","DOI":"10.1038\/s41592-024-02201-0","article-title":"scGPT: toward building a foundation model for single-cell multi-omics using generative AI","volume":"21","author":"Cui","year":"2024","journal-title":"Nat Methods"},{"key":"2025121705413628300_qzaf059-B4","doi-asserted-by":"crossref","first-page":"1481","DOI":"10.1038\/s41592-024-02305-7","article-title":"Large-scale foundation model on single-cell transcriptomics","volume":"21","author":"Hao","year":"2024","journal-title":"Nat Methods"},{"key":"2025121705413628300_qzaf059-B5","doi-asserted-by":"crossref","first-page":"830","DOI":"10.1038\/s41422-024-01034-y","article-title":"GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model","volume":"34","author":"Yang","year":"2024","journal-title":"Cell Res"},{"key":"2025121705413628300_qzaf059-B6","doi-asserted-by":"crossref","first-page":"4679","DOI":"10.1038\/s41467-025-59926-5","article-title":"CellFM: a large-scale foundation model pre-trained on transcriptomics of 100 million human cells","volume":"16","author":"Zeng","year":"2025","journal-title":"Nat Commun"},{"key":"2025121705413628300_qzaf059-B7","doi-asserted-by":"crossref","first-page":"qzaf024","DOI":"10.1093\/gpbjnl\/qzaf024","article-title":"scPlantLLM: a foundation model for exploring single-cell expression atlases in plants.","volume":"23","author":"Cao","year":"2025","journal-title":"Genomics Proteomics Bioinformatics"},{"key":"2025121705413628300_qzaf059-B8","doi-asserted-by":"crossref","first-page":"7045","DOI":"10.1016\/j.cell.2024.11.015","article-title":"How to build the virtual cell with artificial intelligence: priorities and opportunities","volume":"187","author":"Bunne","year":"2024","journal-title":"Cell"},{"key":"2025121705413628300_qzaf059-B9","first-page":"638918","article-title":"Genome modeling and design across all domains of life with Evo2","author":"Brixi","year":"2025","journal-title":"bioRxiv"},{"key":"2025121705413628300_qzaf059-B10","doi-asserted-by":"crossref","first-page":"e2404845","DOI":"10.1002\/advs.202404845","article-title":"Cross-modal graph contrastive learning with cellular images","volume":"11","author":"Zheng","year":"2024","journal-title":"Adv Sci (Weinh)"}],"container-title":["Genomics, Proteomics & Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/gpb\/advance-article-pdf\/doi\/10.1093\/gpbjnl\/qzaf059\/63580435\/qzaf059.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/gpb\/article-pdf\/23\/3\/qzaf059\/63580435\/qzaf059.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/gpb\/article-pdf\/23\/3\/qzaf059\/63580435\/qzaf059.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,12,17]],"date-time":"2025-12-17T10:41:59Z","timestamp":1765968119000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/gpb\/article\/doi\/10.1093\/gpbjnl\/qzaf059\/8173801"}},"subtitle":[],"editor":[{"given":"Ge","family":"Gao","sequence":"additional","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2025,6]]},"references-count":10,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2025,7,11]]}},"URL":"https:\/\/doi.org\/10.1093\/gpbjnl\/qzaf059","relation":{},"ISSN":["1672-0229","2210-3244"],"issn-type":[{"value":"1672-0229","type":"print"},{"value":"2210-3244","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2025,6]]},"published":{"date-parts":[[2025,6]]},"article-number":"qzaf059"}}