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Since its first release in November 2016, AnnoLnc has been the only online server for comprehensively annotating novel human lncRNAs on-the-fly. Here, with significant updates to multiple annotation modules, backend datasets and the code base, AnnoLnc2 continues the effort to provide the scientific community with a one-stop online portal for systematically annotating novel human and mouse lncRNAs with a comprehensive functional spectrum covering sequences, structure, expression, regulation, genetic association and evolution. In response to numerous requests from multiple users, a standalone package is also provided for large-scale offline analysis. We believe that updated AnnoLnc2 (http:\/\/annolnc.gao-lab.org\/) will help both computational and bench biologists identify lncRNA functions and investigate underlying mechanisms.<\/jats:p>","DOI":"10.1093\/nar\/gkaa368","type":"journal-article","created":{"date-parts":[[2020,4,29]],"date-time":"2020-04-29T19:11:08Z","timestamp":1588187468000},"page":"W230-W238","source":"Crossref","is-referenced-by-count":58,"title":["AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse"],"prefix":"10.1093","volume":"48","author":[{"given":"Lan","family":"Ke","sequence":"first","affiliation":[{"name":"School of Life Sciences, Biomedical Pioneering Innovation Center (BIOPIC)\u00a0&\u00a0Beijing Advanced Innovation Center for Genomics (ICG), Center for Bioinformatics (CBI) and State Key Laboratory of Protein and Plant Gene Research, Peking University, Beijing\u00a0100871, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"De-Chang","family":"Yang","sequence":"first","affiliation":[{"name":"School of Life Sciences, Biomedical Pioneering Innovation Center (BIOPIC)\u00a0&\u00a0Beijing Advanced Innovation Center for Genomics (ICG), Center for Bioinformatics (CBI) and State Key Laboratory of Protein and Plant Gene Research, Peking University, Beijing\u00a0100871, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yu","family":"Wang","sequence":"first","affiliation":[{"name":"School of Life Sciences, Biomedical Pioneering Innovation Center (BIOPIC)\u00a0&\u00a0Beijing Advanced Innovation Center for Genomics (ICG), Center for Bioinformatics (CBI) and State Key Laboratory of Protein and Plant Gene Research, Peking University, Beijing\u00a0100871, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yang","family":"Ding","sequence":"first","affiliation":[{"name":"Beijing Institute of Radiation Medicine, Beijing\u00a0100850, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6470-8815","authenticated-orcid":false,"given":"Ge","family":"Gao","sequence":"first","affiliation":[{"name":"School of Life Sciences, Biomedical Pioneering Innovation Center (BIOPIC)\u00a0&\u00a0Beijing Advanced Innovation Center for Genomics (ICG), Center for Bioinformatics (CBI) and State Key Laboratory of Protein and Plant Gene Research, Peking University, Beijing\u00a0100871, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2020,5,14]]},"reference":[{"key":"2020062614042329900_B1","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1016\/j.cell.2013.06.020","article-title":"lincRNAs: genomics, evolution, and mechanisms","volume":"154","author":"Ulitsky","year":"2013","journal-title":"Cell"},{"key":"2020062614042329900_B2","doi-asserted-by":"crossref","first-page":"206","DOI":"10.1186\/s13059-017-1348-2","article-title":"The multidimensional mechanisms of long noncoding RNA function","volume":"18","author":"Marchese","year":"2017","journal-title":"Genome Biol."},{"key":"2020062614042329900_B3","doi-asserted-by":"crossref","first-page":"556","DOI":"10.1101\/gr.6036807","article-title":"Functionality or transcriptional noise? 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