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Human ATAC-seq datasets are accumulating rapidly, prompting an urgent need to comprehensively collect and effectively process these data. We developed a comprehensive human chromatin accessibility database (ATACdb, http:\/\/www.licpathway.net\/ATACdb), with the aim of providing a large amount of publicly available resources on human chromatin accessibility data, and to annotate and illustrate potential roles in a tissue\/cell type-specific manner. The current version of ATACdb documented a total of 52\u00a0078\u00a0883 regions from over 1400 ATAC-seq samples. These samples have been manually curated from over 2200 chromatin accessibility samples from NCBI GEO\/SRA. To make these datasets more accessible to the research community, ATACdb provides a quality assurance process including four quality control (QC) metrics. ATACdb provides detailed (epi)genetic annotations in chromatin accessibility regions, including super-enhancers, typical enhancers, transcription factors (TFs), common single-nucleotide polymorphisms (SNPs), risk SNPs, eQTLs, LD SNPs, methylations, chromatin interactions and TADs. Especially, ATACdb provides accurate inference of TF footprints within chromatin accessibility regions. ATACdb is a powerful platform that provides the most comprehensive accessible chromatin data, QC, TF footprint and various other annotations.<\/jats:p>","DOI":"10.1093\/nar\/gkaa943","type":"journal-article","created":{"date-parts":[[2020,10,29]],"date-time":"2020-10-29T12:11:10Z","timestamp":1603973470000},"page":"D55-D64","source":"Crossref","is-referenced-by-count":58,"title":["ATACdb: a comprehensive human chromatin accessibility database"],"prefix":"10.1093","volume":"49","author":[{"given":"Fan","family":"Wang","sequence":"first","affiliation":[{"name":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xuefeng","family":"Bai","sequence":"additional","affiliation":[{"name":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, 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