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As the depository of the Global Catalogue of Microorganisms (GCM) 10K prokaryotic type strain sequencing project, Global Catalogue of Type Strain (gcType) has published 1049\u00a0type strain genomes sequenced by the GCM 10K project which are preserved in global culture collections with a valid published status. Additionally, the information provided through gcType includes &amp;gt;12 000 publicly available type strain genome sequences from GenBank incorporated using quality control criteria and standard data annotation pipelines to form a high-quality reference database. This database integrates type strain sequences with their phenotypic information to facilitate phenotypic and genotypic analyses. Multiple formats of cross-genome searches and interactive interfaces have allowed extensive exploration of the database's resources. In this study, we describe web-based data analysis pipelines for genomic analyses and genome-based taxonomy, which could serve as a one-stop platform for the identification of prokaryotic species. The number of type strain genomes that are published will continue to increase as the GCM 10K project increases its collaboration with culture collections worldwide. Data of this project is shared with the International Nucleotide Sequence Database Collaboration. Access to gcType is free at http:\/\/gctype.wdcm.org\/.<\/jats:p>","DOI":"10.1093\/nar\/gkaa957","type":"journal-article","created":{"date-parts":[[2020,10,28]],"date-time":"2020-10-28T12:11:42Z","timestamp":1603887102000},"page":"D694-D705","source":"Crossref","is-referenced-by-count":81,"title":["gcType: a high-quality type strain genome database for microbial phylogenetic and functional research"],"prefix":"10.1093","volume":"49","author":[{"given":"Wenyu","family":"Shi","sequence":"first","affiliation":[{"name":"Microbial Resource and Big Data Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"World Data Center for Microorganisms, Beijing 100101, China"}]},{"given":"Qinglan","family":"Sun","sequence":"additional","affiliation":[{"name":"Microbial Resource and Big Data Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"World Data Center for Microorganisms, Beijing 100101, China"},{"name":"China-Thailand Joint Laboratory on Microbial Biotechnology, Beijing 100190, China"}]},{"given":"Guomei","family":"Fan","sequence":"additional","affiliation":[{"name":"Microbial Resource and Big Data Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"World Data Center for Microorganisms, Beijing 100101, China"}]},{"given":"Sugawara","family":"Hideaki","sequence":"additional","affiliation":[{"name":"National Institute of Genetics, Yata, Mishima 411-8540, Japan"}]},{"given":"Ohkuma","family":"Moriya","sequence":"additional","affiliation":[{"name":"Japan Collection of Microorganisms (JCM)\/ Microbe Divion, RIKEN BioResource Center, Koyadai 3-1-1, Tsukuba, Ibaraki 305-0074, Japan"}]},{"given":"Takashi","family":"Itoh","sequence":"additional","affiliation":[{"name":"Japan Collection of Microorganisms (JCM)\/ Microbe Divion, RIKEN BioResource Center, Koyadai 3-1-1, Tsukuba, Ibaraki 305-0074, Japan"}]},{"given":"Yuguang","family":"Zhou","sequence":"additional","affiliation":[{"name":"China General Microbiological Culture Collection Center (CGMCC), Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China"}]},{"given":"Man","family":"Cai","sequence":"additional","affiliation":[{"name":"China General Microbiological Culture Collection Center (CGMCC), Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China"}]},{"given":"Song-Gun","family":"Kim","sequence":"additional","affiliation":[{"name":"Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), 181 Ipsin-gil, Jeongeup-si, Jeollabuk-do, 56212, Republic of Korea"}]},{"given":"Jung-Sook","family":"Lee","sequence":"additional","affiliation":[{"name":"Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), 181 Ipsin-gil, Jeongeup-si, Jeollabuk-do, 56212, Republic of Korea"}]},{"given":"Ivo","family":"Sedlacek","sequence":"additional","affiliation":[{"name":"Czech Collection of Microorganisms, Masaryk University, Kamenice 5, building A25, 625 00 Brno, Czech Republic"}]},{"given":"David R","family":"Arahal","sequence":"additional","affiliation":[{"name":"Colecci\u00f3n Espa\u00f1ola de Cultivos Tipo (CECT), and Departamento de Microbiolog\u00eda y Ecolog\u00eda, University of Valencia, 46100 Burjassot (Valencia), Spain"}]},{"given":"Teresa","family":"Lucena","sequence":"additional","affiliation":[{"name":"Colecci\u00f3n Espa\u00f1ola de Cultivos Tipo (CECT), and Departamento de Microbiolog\u00eda y Ecolog\u00eda, University of Valencia, 46100 Burjassot (Valencia), Spain"}]},{"given":"Hiroko","family":"Kawasaki","sequence":"additional","affiliation":[{"name":"NITE Biological Resource Center (NBRC), National Institute of Technology and Evaluation, 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan"}]},{"given":"Lyudmila","family":"Evtushenko","sequence":"additional","affiliation":[{"name":"All-Russian Collection of Microorganisms (VKM), G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, Pushchino, Moscow region 142290, Russia"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2580-0701","authenticated-orcid":false,"given":"Bevan\u00a0S","family":"Weir","sequence":"additional","affiliation":[{"name":"Mycology & Bacteriology Systematics, Manaaki Whenua \u2013 Landcare Research, Auckland, New Zealand"}]},{"given":"Sarah","family":"Alexander","sequence":"additional","affiliation":[{"name":"National Collection of Type Cultures (NCTC), Public Health England (PHE), UK"}]},{"given":"Dlauchy","family":"D\u00e9nes","sequence":"additional","affiliation":[{"name":"National Collection of Agricultural and Industrial Microorganisms, Faculty of Food Science, Szent Istv\u00e1n University, H-1118, Budapest, Soml\u00f3i \u00fat 14-16, Hungary"}]},{"given":"Somboon","family":"Tanasupawat","sequence":"additional","affiliation":[{"name":"Faculty of Pharmaceutical Sciences, Chulalongkorn University (PCU), Bangkok 10330, Thailand"}]},{"given":"Lily","family":"Eurwilaichitr","sequence":"additional","affiliation":[{"name":"China-Thailand Joint Laboratory on Microbial Biotechnology, Beijing 100190, China"},{"name":"Thailand Bioresource Research Center (TBRC), National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Thailand"}]},{"given":"Supawadee","family":"Ingsriswang","sequence":"additional","affiliation":[{"name":"China-Thailand Joint Laboratory on Microbial Biotechnology, Beijing 100190, China"},{"name":"Thailand Bioresource Research Center (TBRC), National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Thailand"}]},{"given":"Bruno","family":"Gomez-Gil","sequence":"additional","affiliation":[{"name":"CIAD, A.C., Collection of Aquatic Important Microorganisms (CAIM). 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