{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,22]],"date-time":"2026-06-22T22:33:32Z","timestamp":1782167612652,"version":"3.54.5"},"reference-count":58,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2021,11,12]],"date-time":"2021-11-12T00:00:00Z","timestamp":1636675200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000268","name":"Biotechnology and Biological Sciences Research Council","doi-asserted-by":"publisher","award":["BB\/S020020\/1"],"award-info":[{"award-number":["BB\/S020020\/1"]}],"id":[{"id":"10.13039\/501100000268","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000268","name":"BBSRC","doi-asserted-by":"publisher","award":["BB\/P016855\/1"],"award-info":[{"award-number":["BB\/P016855\/1"]}],"id":[{"id":"10.13039\/501100000268","id-type":"DOI","asserted-by":"publisher"}]},{"name":"BBSRC Research Council","award":["BB\/K020102\/1"],"award-info":[{"award-number":["BB\/K020102\/1"]}]},{"name":"BBSRC Research Council","award":["BB\/I001077\/1"],"award-info":[{"award-number":["BB\/I001077\/1"]}]},{"name":"BBSRC Research Council","award":["BB\/S02011X\/1"],"award-info":[{"award-number":["BB\/S02011X\/1"]}]},{"DOI":"10.13039\/100010269","name":"Wellcome Trust","doi-asserted-by":"publisher","award":["108749\/Z\/15\/Z"],"award-info":[{"award-number":["108749\/Z\/15\/Z"]}],"id":[{"id":"10.13039\/100010269","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100013060","name":"European Molecular Biology Laboratory","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100013060","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,1,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Since 2005, the Pathogen\u2013Host Interactions Database (PHI-base) has manually curated experimentally verified pathogenicity, virulence\u00a0and effector genes from fungal, bacterial and\u00a0protist pathogens,\u00a0which infect animal, plant, fish, insect and\/or fungal hosts. PHI-base (www.phi-base.org) is devoted to the identification and presentation of phenotype information on pathogenicity and effector genes and their host interactions. Specific gene\u00a0alterations that did not alter the\u00a0in host\u00a0interaction phenotype\u00a0are also presented.\u00a0PHI-base is invaluable for comparative analyses and for the discovery of candidate targets in medically and agronomically important species for intervention. Version 4.12 (September 2021) contains 4387 references, and provides information on 8411 genes from 279 pathogens, tested on 228 hosts in\u00a018, 190 interactions. This provides a 24% increase in gene content since Version 4.8 (September 2019). Bacterial and fungal pathogens represent the majority of the interaction data, with a 54:46 split of entries, whilst protists, protozoa, nematodes\u00a0and insects represent 3.6% of entries. Host species consist of approximately 54% plants and 46% others of medical, veterinary and\/or environmental importance. PHI-base data is disseminated to UniProtKB, FungiDB and Ensembl Genomes. PHI-base will migrate to a new gene-centric version (version 5.0) in early 2022. This major development is briefly described.<\/jats:p>","DOI":"10.1093\/nar\/gkab1037","type":"journal-article","created":{"date-parts":[[2021,11,8]],"date-time":"2021-11-08T20:14:06Z","timestamp":1636402446000},"page":"D837-D847","source":"Crossref","is-referenced-by-count":163,"title":["PHI-base in 2022: a multi-species phenotype database for Pathogen\u2013Host Interactions"],"prefix":"10.1093","volume":"50","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-2440-4352","authenticated-orcid":false,"given":"Martin","family":"Urban","sequence":"first","affiliation":[{"name":"Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden\u00a0AL5 2JQ, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8941-3984","authenticated-orcid":false,"given":"Alayne","family":"Cuzick","sequence":"additional","affiliation":[{"name":"Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden\u00a0AL5 2JQ, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7487-610X","authenticated-orcid":false,"given":"James","family":"Seager","sequence":"additional","affiliation":[{"name":"Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden\u00a0AL5 2JQ, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6330-7526","authenticated-orcid":false,"given":"Valerie","family":"Wood","sequence":"additional","affiliation":[{"name":"Department of Biochemistry, University of Cambridge, Cambridge\u00a0CB2 1GA, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6277-726X","authenticated-orcid":false,"given":"Kim","family":"Rutherford","sequence":"additional","affiliation":[{"name":"Department of Biochemistry, University of Cambridge, Cambridge\u00a0CB2 1GA, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shilpa\u00a0Yagwakote","family":"Venkatesh","sequence":"additional","affiliation":[{"name":"Molecular Connections, Kandala Mansions, Kariappa Road, Basavanagudi, Bengaluru\u00a0560 004, India"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jashobanta","family":"Sahu","sequence":"additional","affiliation":[{"name":"Molecular Connections, Kandala Mansions, Kariappa Road, Basavanagudi, Bengaluru\u00a0560 004, India"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S Vijaylakshmi","family":"Iyer","sequence":"additional","affiliation":[{"name":"Molecular Connections, Kandala Mansions, Kariappa Road, Basavanagudi, Bengaluru\u00a0560 004, India"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lokanath","family":"Khamari","sequence":"additional","affiliation":[{"name":"Molecular Connections, Kandala Mansions, Kariappa Road, Basavanagudi, Bengaluru\u00a0560 004, India"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4802-2375","authenticated-orcid":false,"given":"Nishadi","family":"De\u00a0Silva","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge\u00a0CB10 1SD, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manuel Carbajo","family":"Martinez","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge\u00a0CB10 1SD, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7582-1565","authenticated-orcid":false,"given":"Helder","family":"Pedro","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge\u00a0CB10 1SD, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8886-4772","authenticated-orcid":false,"given":"Andrew\u00a0D","family":"Yates","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge\u00a0CB10 1SD, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9699-485X","authenticated-orcid":false,"given":"Kim\u00a0E","family":"Hammond-Kosack","sequence":"additional","affiliation":[{"name":"Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden\u00a0AL5 2JQ, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2021,11,12]]},"reference":[{"key":"2022010507303329300_B1","doi-asserted-by":"crossref","first-page":"165rv13","DOI":"10.1126\/scitranslmed.3004404","article-title":"Hidden killers: Human fungal infections","volume":"4","author":"Brown","year":"2012","journal-title":"Sci. Transl. Med."},{"key":"2022010507303329300_B2","doi-asserted-by":"crossref","first-page":"739","DOI":"10.1126\/science.aap7999","article-title":"Worldwide emergence of resistance to antifungal drugs challenges human health and food security","volume":"360","author":"Fisher","year":"2018","journal-title":"Science"},{"key":"2022010507303329300_B3","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1038\/nature10947","article-title":"Emerging fungal threats to animal, plant and ecosystem health","volume":"484","author":"Fisher","year":"2012","journal-title":"Nature"},{"key":"2022010507303329300_B4","doi-asserted-by":"crossref","first-page":"100080","DOI":"10.1016\/j.onehlt.2018.100080","article-title":"Infectious disease and economics: the case for considering multi-sectoral impacts","volume":"7","author":"Smith","year":"2019","journal-title":"One Health-Amsterdam"},{"key":"2022010507303329300_B5","doi-asserted-by":"crossref","first-page":"549","DOI":"10.3389\/fimmu.2019.00549","article-title":"Infectious disease threats in the twenty-first century: Strengthening the global response","volume":"10","author":"Bloom","year":"2019","journal-title":"Front. Immunol."},{"key":"2022010507303329300_B6","doi-asserted-by":"crossref","first-page":"985","DOI":"10.1038\/nclimate1990","article-title":"Crop pests and pathogens move polewards in a warming world","volume":"3","author":"Bebber","year":"2013","journal-title":"Nature Climate Change"},{"key":"2022010507303329300_B7","doi-asserted-by":"crossref","first-page":"710","DOI":"10.1038\/s41558-021-01104-8","article-title":"Plant pathogen infection risk tracks global crop yields under climate change","volume":"11","author":"Chaloner","year":"2021","journal-title":"Nature Climate Change"},{"key":"2022010507303329300_B8","doi-asserted-by":"crossref","first-page":"3358","DOI":"10.1002\/ps.6380","article-title":"High frequency of fungicide resistance-associated mutations in the wheat yellow rust pathogen Puccinia striiformis f. sp. tritici","volume":"77","author":"Cook","year":"2021","journal-title":"Pest Manag. Sci."},{"key":"2022010507303329300_B9","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1016\/j.tim.2018.11.001","article-title":"Memory in fungal pathogens promotes immune evasion, colonisation, and infection","volume":"27","author":"Brown","year":"2019","journal-title":"Trends Microbiol."},{"key":"2022010507303329300_B10","doi-asserted-by":"crossref","first-page":"aaf6395","DOI":"10.1126\/science.aaf6395","article-title":"Intracellular innate immune surveillance devices in plants and animals","volume":"354","author":"Jones","year":"2016","journal-title":"Science"},{"key":"2022010507303329300_B11","doi-asserted-by":"crossref","first-page":"102054","DOI":"10.1016\/j.pbi.2021.102054","article-title":"Tactics of host manipulation by intracellular effectors from plant pathogenic fungi","volume":"62","author":"Figueroa","year":"2021","journal-title":"Curr. Opin. Plant Biol."},{"key":"2022010507303329300_B12","doi-asserted-by":"crossref","first-page":"453","DOI":"10.4161\/viru.25180","article-title":"Prediction of molecular mimicry candidates in human pathogenic bacteria","volume":"4","author":"Doxey","year":"2013","journal-title":"Virulence"},{"key":"2022010507303329300_B13","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1093\/aob\/mcx125","article-title":"Molecular mimicry modulates plant host responses to pathogens","volume":"121","author":"Ronald","year":"2018","journal-title":"Ann Bot"},{"key":"2022010507303329300_B14","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1104\/pp.18.01224","article-title":"Genetic engineering for disease resistance in plants: Recent progress and future perspectives","volume":"180","author":"Dong","year":"2019","journal-title":"Plant Physiol."},{"key":"2022010507303329300_B15","first-page":"279","volume-title":"Plant Pathology and Plant Pathogens","author":"Lucas","year":"2020","edition":"4th edn"},{"key":"2022010507303329300_B16","doi-asserted-by":"crossref","first-page":"550","DOI":"10.3389\/fpls.2019.00550","article-title":"Harnessing genome editing techniques to engineer disease resistance in plants","volume":"10","author":"Mushtaq","year":"2019","journal-title":"Front. Plant Sci."},{"key":"2022010507303329300_B17","first-page":"243","article-title":"Microbial biopesticides: current status and advancement for sustainable agriculture and environment","volume-title":"Trends of Microbial Biotechnology for Sustainable Agriculture and Biomedicine Systems: Diversity and Functional Perspectives","author":"Thakur","year":"2020"},{"key":"2022010507303329300_B18","doi-asserted-by":"crossref","first-page":"160018","DOI":"10.1038\/sdata.2016.18","article-title":"The FAIR Guiding Principles for scientific data management and stewardship","volume":"3","author":"Wilkinson","year":"2016","journal-title":"Scientific Data"},{"key":"2022010507303329300_B19","doi-asserted-by":"crossref","first-page":"2422","DOI":"10.12688\/f1000research.9656.1","article-title":"Identifying ELIXIR core data resources","volume":"5","author":"Durinx","year":"2016","journal-title":"F1000Research"},{"key":"2022010507303329300_B20","doi-asserted-by":"crossref","first-page":"D604","DOI":"10.1093\/nar\/gkw1089","article-title":"PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database","volume":"45","author":"Urban","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B21","first-page":"D613","article-title":"PHI-base: the pathogen-host interactions database","volume":"48","author":"Urban","year":"2020","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B22","doi-asserted-by":"crossref","first-page":"D645","DOI":"10.1093\/nar\/gku1165","article-title":"The Pathogen-Host Interactions database (PHI-base): additions and future developments","volume":"43","author":"Urban","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B23","doi-asserted-by":"crossref","first-page":"D689","DOI":"10.1093\/nar\/gkz890","article-title":"Ensembl Genomes 2020-enabling non-vertebrate genomic research","volume":"48","author":"Howe","year":"2020","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B24","doi-asserted-by":"crossref","first-page":"D688","DOI":"10.1093\/nar\/gkv1052","article-title":"PhytoPath: an integrative resource for plant pathogen genomics","volume":"44","author":"Pedro","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B25","doi-asserted-by":"crossref","first-page":"39","DOI":"10.3390\/jof4010039","article-title":"FungiDB: An integrated bioinformatic resource for fungi and oomycetes","volume":"4","author":"Basenko","year":"2018","journal-title":"J. Fungi"},{"key":"2022010507303329300_B26","doi-asserted-by":"crossref","first-page":"baaa062","DOI":"10.1093\/database\/baaa062","article-title":"NCBI Taxonomy: a comprehensive update on curation, resources and tools","volume":"2020","author":"Schoch","year":"2020","journal-title":"Database"},{"key":"2022010507303329300_B27","doi-asserted-by":"crossref","first-page":"D506","DOI":"10.1093\/nar\/gky1049","article-title":"UniProt: a worldwide hub of protein knowledge","volume":"47","author":"UniProt, C.","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B28","doi-asserted-by":"crossref","first-page":"D530","DOI":"10.1093\/nar\/gks1050","article-title":"Gene Ontology annotations and resources","volume":"41","author":"Gene Ontology Consortium, T.","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B29","doi-asserted-by":"crossref","first-page":"D1214","DOI":"10.1093\/nar\/gkv1031","article-title":"ChEBI in 2016: Improved services and an expanding collection of metabolites","volume":"44","author":"Hastings","year":"2016","journal-title":"NucleicAcidsRes."},{"key":"2022010507303329300_B30","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1016\/j.tim.2015.09.008","article-title":"New and improved techniques for the study of pathogenic fungi","volume":"24","author":"Cairns","year":"2016","journal-title":"Trends Microbiol."},{"key":"2022010507303329300_B31","doi-asserted-by":"crossref","first-page":"605","DOI":"10.3389\/fpls.2015.00605","article-title":"Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence","volume":"6","author":"Urban","year":"2015","journal-title":"Front. Plant Sci"},{"key":"2022010507303329300_B32","doi-asserted-by":"crossref","first-page":"41031","DOI":"10.1038\/srep41031","article-title":"SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems","volume":"7","author":"An","year":"2017","journal-title":"Sci. Rep."},{"key":"2022010507303329300_B33","doi-asserted-by":"crossref","first-page":"e101638","DOI":"10.1371\/journal.pone.0101638","article-title":"Strategic focus on 3R principles reveals major reductions in the use of animals in pharmaceutical toxicity testing","volume":"9","author":"Tornqvist","year":"2014","journal-title":"PLoS One"},{"key":"2022010507303329300_B34","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1093\/femsre\/fuv042","article-title":"The trans-kingdom identification of negative regulators of pathogen hypervirulence","volume":"40","author":"Brown","year":"2016","journal-title":"FEMS Microbiol. Rev."},{"key":"2022010507303329300_B35","doi-asserted-by":"crossref","first-page":"115","DOI":"10.1094\/MPMI-22-2-0115","article-title":"Emerging concepts in effector biology of plant-associated organisms","volume":"22","author":"Hogenhout","year":"2009","journal-title":"Mol. Plant-Microbe Interact."},{"key":"2022010507303329300_B36","doi-asserted-by":"crossref","first-page":"1353","DOI":"10.1111\/mpp.12980","article-title":"Proteinaceous effector discovery and characterization in filamentous plant pathogens","volume":"21","author":"Kanja","year":"2020","journal-title":"Mol. Plant Pathol."},{"key":"2022010507303329300_B37","doi-asserted-by":"crossref","first-page":"D712","DOI":"10.1093\/nar\/gkw1128","article-title":"The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species","volume":"45","author":"Mungall","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B38","doi-asserted-by":"crossref","first-page":"D955","DOI":"10.1093\/nar\/gky1032","article-title":"Human Disease Ontology 2018 update: classification, content and workflow expansion","volume":"47","author":"Schriml","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B39","doi-asserted-by":"crossref","first-page":"D1207","DOI":"10.1093\/nar\/gkaa1043","article-title":"The Human Phenotype Ontology in 2021","volume":"49","author":"Kohler","year":"2021","journal-title":"Nucleic. Acids Res."},{"key":"2022010507303329300_B40","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1016\/j.jbi.2006.02.013","article-title":"NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information","volume":"40","author":"Sioutos","year":"2007","journal-title":"J. Biomed. Inform."},{"key":"2022010507303329300_B41","doi-asserted-by":"crossref","first-page":"bar030","DOI":"10.1093\/database\/bar030","article-title":"Ensembl BioMarts: a hub for data retrieval across taxonomic space","volume":"2011","author":"Kinsella","year":"2011","journal-title":"Database"},{"key":"2022010507303329300_B42","doi-asserted-by":"crossref","first-page":"1251","DOI":"10.1038\/nbt1346","article-title":"The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration","volume":"25","author":"Smith","year":"2007","journal-title":"Nat. Biotechnol."},{"key":"2022010507303329300_B43","doi-asserted-by":"crossref","first-page":"D1057","DOI":"10.1093\/nar\/gku1113","article-title":"The GOA database: gene ontology annotation updates for 2015","volume":"43","author":"Huntley","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B44","doi-asserted-by":"crossref","first-page":"D8","DOI":"10.1093\/nar\/gkx1095","article-title":"Database resources of the National Center for Biotechnology Information","volume":"46","author":"NCBI Resource Coordinators","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B45","doi-asserted-by":"crossref","first-page":"1596","DOI":"10.1093\/bib\/bbz076","article-title":"Predicting bacterial virulence factors - evaluation of machine learning and negative data strategies","volume":"21","author":"Rentzsch","year":"2020","journal-title":"Brief. Bioinform."},{"key":"2022010507303329300_B46","doi-asserted-by":"crossref","first-page":"100085","DOI":"10.1016\/j.xplc.2020.100085","article-title":"Apoplastic proteases: powerful weapons against pathogen infection in plants","volume":"1","author":"Wang","year":"2020","journal-title":"Plant Commun"},{"key":"2022010507303329300_B47","doi-asserted-by":"crossref","first-page":"2094","DOI":"10.1111\/mpp.12682","article-title":"Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0","volume":"19","author":"Sperschneider","year":"2018","journal-title":"Mol. Plant Pathol."},{"key":"2022010507303329300_B48","doi-asserted-by":"crossref","first-page":"372","DOI":"10.1186\/s12859-021-04293-3","article-title":"Accurate plant pathogen effector protein classification ab initio with deepredeff: an ensemble of convolutional neural networks","volume":"22","author":"Kristianingsih","year":"2021","journal-title":"BMC Bioinformatics"},{"key":"2022010507303329300_B49","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1038\/s41392-020-00315-3","article-title":"Recent advances in the development of protein-protein interactions modulators: mechanisms and clinical trials","volume":"5","author":"Lu","year":"2020","journal-title":"Signal Transduct. Target Ther."},{"key":"2022010507303329300_B50","doi-asserted-by":"crossref","first-page":"684","DOI":"10.1126\/science.aad3436","article-title":"Using decoys to expand the recognition specificity of a plant disease resistance protein","volume":"351","author":"Kim","year":"2016","journal-title":"Science"},{"key":"2022010507303329300_B51","doi-asserted-by":"crossref","first-page":"D607","DOI":"10.1093\/nar\/gky1131","article-title":"STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets","volume":"47","author":"Szklarczyk","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"2022010507303329300_B52","doi-asserted-by":"crossref","first-page":"3","DOI":"10.3390\/microorganisms5010003","article-title":"Using network extracted ontologies to identify novel genes with roles in appressorium development in the rice blast fungus Magnaporthe oryzae","volume":"5","author":"Ames","year":"2017","journal-title":"Microorganisms"},{"key":"2022010507303329300_B53","doi-asserted-by":"crossref","first-page":"102","DOI":"10.15302\/J-FASE-2016100","article-title":"Systems understanding of plant-pathogen interactions through genome-wide protein-protein interaction networks","volume":"3","author":"Li","year":"2016","journal-title":"Front. Agric. Sci. Eng."},{"key":"2022010507303329300_B54","doi-asserted-by":"crossref","first-page":"448","DOI":"10.1093\/bib\/bbx132","article-title":"Prediction of protein-protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.)","volume":"20","author":"Ma","year":"2019","journal-title":"Brief. Bioinform"},{"key":"2022010507303329300_B55","doi-asserted-by":"crossref","first-page":"2721","DOI":"10.3389\/fmicb.2019.02721","article-title":"PHI-Nets: A network resource for Ascomycete fungal pathogens to annotate and identify putative virulence interacting proteins and siRNA targets","volume":"10","author":"Janowska-Sejda","year":"2019","journal-title":"Front. Microbiol."},{"key":"2022010507303329300_B56","doi-asserted-by":"crossref","first-page":"12","DOI":"10.3389\/fgene.2020.00375","article-title":"Identifying Candida albicans gene networks involved in pathogenicity","volume":"11","author":"Thomas","year":"2020","journal-title":"Front. Genet."},{"key":"2022010507303329300_B57","doi-asserted-by":"crossref","first-page":"1791","DOI":"10.1093\/bioinformatics\/btu103","article-title":"Canto: an online tool for community literature curation","volume":"30","author":"Rutherford","year":"2014","journal-title":"Bioinformatics"},{"key":"2022010507303329300_B58","doi-asserted-by":"crossref","first-page":"1670","DOI":"10.1111\/pbi.13583","article-title":"KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species","volume":"19","author":"Hassani-Pak","year":"2021","journal-title":"Plant Biotechnol. J."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/nar\/article-pdf\/50\/D1\/D837\/42057572\/gkab1037.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/nar\/article-pdf\/50\/D1\/D837\/42057572\/gkab1037.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,5]],"date-time":"2022-01-05T07:45:34Z","timestamp":1641368734000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article\/50\/D1\/D837\/6426057"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,11,12]]},"references-count":58,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2021,11,12]]},"published-print":{"date-parts":[[2022,1,7]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkab1037","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2022,1,7]]},"published":{"date-parts":[[2021,11,12]]}}}