{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,16]],"date-time":"2026-01-16T19:41:24Z","timestamp":1768592484445,"version":"3.49.0"},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2021,11,9]],"date-time":"2021-11-09T00:00:00Z","timestamp":1636416000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002241","name":"Japan Science and Technology Agency","doi-asserted-by":"publisher","award":["JPMJCR1501"],"award-info":[{"award-number":["JPMJCR1501"]}],"id":[{"id":"10.13039\/501100002241","id-type":"DOI","asserted-by":"publisher"}]},{"name":"NBDC for MetaboBank"},{"DOI":"10.13039\/100009619","name":"Japan Agency for Medical Research and Development","doi-asserted-by":"publisher","award":["20gm1010006h0004"],"award-info":[{"award-number":["20gm1010006h0004"]}],"id":[{"id":"10.13039\/100009619","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,1,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>The Bioinformation and DDBJ (DNA Data Bank of Japan) Center (DDBJ Center; https:\/\/www.ddbj.nig.ac.jp) operates archival databases that collect nucleotide sequences, study and sample information, and distribute them without access restriction to progress life science research as a member of the International Nucleotide Sequence Database Collaboration (INSDC), in collaboration with the National Center for Biotechnology Information (NCBI) and the European Bioinformatics Institute. Besides the INSDC databases, the DDBJ Center also provides the Genomic Expression Archive for functional genomics data and the Japanese Genotype-phenotype Archive for human data requiring controlled access. Additionally, the DDBJ Center started a new public repository, MetaboBank, for experimental raw data and metadata from metabolomics research in October 2020. In response to the COVID-19 pandemic, the DDBJ Center openly shares SARS-CoV-2 genome sequences in collaboration with Shizuoka Prefecture and Keio University. The operation of DDBJ is based on the National Institute of Genetics (NIG) supercomputer, which is open for large-scale sequence data analysis for life science researchers. This paper reports recent updates on the archival databases and the services of DDBJ.<\/jats:p>","DOI":"10.1093\/nar\/gkab995","type":"journal-article","created":{"date-parts":[[2021,10,12]],"date-time":"2021-10-12T13:12:33Z","timestamp":1634044353000},"page":"D102-D105","source":"Crossref","is-referenced-by-count":32,"title":["DNA Data Bank of Japan (DDBJ) update report 2021"],"prefix":"10.1093","volume":"50","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-1662-8949","authenticated-orcid":false,"given":"Toshihisa","family":"Okido","sequence":"first","affiliation":[{"name":"Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka\u00a0411-8540, Japan"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7691-9812","authenticated-orcid":false,"given":"Yuichi","family":"Kodama","sequence":"additional","affiliation":[{"name":"Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka\u00a0411-8540, Japan"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4138-1893","authenticated-orcid":false,"given":"Jun","family":"Mashima","sequence":"additional","affiliation":[{"name":"Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka\u00a0411-8540, Japan"}]},{"given":"Takehide","family":"Kosuge","sequence":"additional","affiliation":[{"name":"Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka\u00a0411-8540, Japan"}]},{"given":"Takatomo","family":"Fujisawa","sequence":"additional","affiliation":[{"name":"Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka\u00a0411-8540, Japan"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6001-3397","authenticated-orcid":false,"given":"Osamu","family":"Ogasawara","sequence":"additional","affiliation":[{"name":"Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka\u00a0411-8540, Japan"}]}],"member":"286","published-online":{"date-parts":[[2021,11,9]]},"reference":[{"key":"2022010507430033500_B1","doi-asserted-by":"crossref","first-page":"D71","DOI":"10.1093\/nar\/gkaa982","article-title":"DDBJ update: streamlining submission and access of human data","volume":"49","author":"Fukuda","year":"2021","journal-title":"Nucleic Acids Res."},{"key":"2022010507430033500_B2","doi-asserted-by":"crossref","first-page":"D92","DOI":"10.1093\/nar\/gkaa1023","article-title":"GenBank","volume":"49","author":"Sayers","year":"2021","journal-title":"Nucleic Acids Res."},{"key":"2022010507430033500_B3","doi-asserted-by":"crossref","first-page":"D82","DOI":"10.1093\/nar\/gkaa1028","article-title":"The European nucleotide archive in 2020","volume":"49","author":"Harrison","year":"2021","journal-title":"Nucleic Acids Res."},{"key":"2022010507430033500_B4","doi-asserted-by":"crossref","first-page":"D121","DOI":"10.1093\/nar\/gkaa967","article-title":"The international nucleotide sequence database collaboration","volume":"49","author":"Arita","year":"2021","journal-title":"Nucleic Acids Res."},{"key":"2022010507430033500_B5","doi-asserted-by":"crossref","first-page":"D54","DOI":"10.1093\/nar\/gkr854","article-title":"The sequence read archive: explosive growth of sequencing data","volume":"40","author":"Kodama","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"2022010507430033500_B6","doi-asserted-by":"crossref","first-page":"1275","DOI":"10.4056\/sigs.4851102","article-title":"Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records","volume":"9","author":"Federhen","year":"2015","journal-title":"Stand. 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