{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,15]],"date-time":"2026-04-15T21:22:29Z","timestamp":1776288149967,"version":"3.50.1"},"reference-count":56,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2022,10,16]],"date-time":"2022-10-16T00:00:00Z","timestamp":1665878400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100002367","name":"Chinese Academy of Sciences","doi-asserted-by":"publisher","award":["XDB38030400"],"award-info":[{"award-number":["XDB38030400"]}],"id":[{"id":"10.13039\/501100002367","id-type":"DOI","asserted-by":"publisher"}]},{"name":"CAMS Innovation Fund for Medical Sciences","award":["2021-I2M-1-056"],"award-info":[{"award-number":["2021-I2M-1-056"]}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31970634"],"award-info":[{"award-number":["31970634"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32170669"],"award-info":[{"award-number":["32170669"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"National Key Research Program of China","award":["2020YFA0907001"],"award-info":[{"award-number":["2020YFA0907001"]}]},{"name":"National Key Research Program of China","award":["2016YFC0901901"],"award-info":[{"award-number":["2016YFC0901901"]}]},{"name":"National Key Research Program of China","award":["2016YFB0201702"],"award-info":[{"award-number":["2016YFB0201702"]}]},{"name":"Specialized Research Assistant Program of the Chinese Academy of Sciences","award":["202044"],"award-info":[{"award-number":["202044"]}]},{"name":"The Youth Innovation Promotion Association of Chinese Academy of Science","award":["2022098"],"award-info":[{"award-number":["2022098"]}]},{"DOI":"10.13039\/501100002858","name":"China Postdoctoral Science Foundation","doi-asserted-by":"publisher","award":["2021M693109"],"award-info":[{"award-number":["2021M693109"]}],"id":[{"id":"10.13039\/501100002858","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,1,6]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Transcriptome-wide association studies (TWASs), as a practical and prevalent approach for detecting the associations between genetically regulated genes and traits, are now leading to a better understanding of the complex mechanisms of genetic variants in regulating various diseases and traits. Despite the ever-increasing TWAS outputs, there is still a lack of databases curating massive public TWAS information and knowledge. To fill this gap, here we present TWAS Atlas (https:\/\/ngdc.cncb.ac.cn\/twas\/), an integrated knowledgebase of TWAS findings manually curated from extensive literature. In the current implementation, TWAS Atlas collects 401,266 high-quality human gene\u2013trait associations from 200 publications, covering 22,247 genes and 257 traits across 135 tissue types. In particular, an interactive knowledge graph of the collected gene\u2013trait associations is constructed together with single nucleotide polymorphism (SNP)\u2013gene associations to build up comprehensive regulatory networks at multi-omics levels. In addition, TWAS Atlas, as a user-friendly web interface, efficiently enables users to browse, search and download all association information, relevant research metadata and annotation information of interest. Taken together, TWAS Atlas is of great value for promoting the utility and availability of TWAS results in explaining the complex genetic basis as well as providing new insights for human health and disease research.<\/jats:p>","DOI":"10.1093\/nar\/gkac821","type":"journal-article","created":{"date-parts":[[2022,10,16]],"date-time":"2022-10-16T09:46:47Z","timestamp":1665913607000},"page":"D1179-D1187","source":"Crossref","is-referenced-by-count":78,"title":["TWAS Atlas: a curated knowledgebase of transcriptome-wide association studies"],"prefix":"10.1093","volume":"51","author":[{"given":"Mingming","family":"Lu","sequence":"first","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"University of Chinese Academy of Sciences , Beijing \u00a0100049,\u00a0 China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0918-5673","authenticated-orcid":false,"given":"Yadong","family":"Zhang","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"}]},{"given":"Fengchun","family":"Yang","sequence":"additional","affiliation":[{"name":"Institute of Medical Information, Chinese Academy of Medical Sciences\/Peking Union Medical College , Beijing \u00a0100020,\u00a0 China"}]},{"given":"Jialin","family":"Mai","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"University of Chinese Academy of Sciences , Beijing \u00a0100049,\u00a0 China"}]},{"given":"Qianwen","family":"Gao","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"University of Chinese Academy of Sciences , Beijing \u00a0100049,\u00a0 China"}]},{"given":"Xiaowei","family":"Xu","sequence":"additional","affiliation":[{"name":"Institute of Medical Information, Chinese Academy of Medical Sciences\/Peking Union Medical College , Beijing \u00a0100020,\u00a0 China"}]},{"given":"Hongyu","family":"Kang","sequence":"additional","affiliation":[{"name":"Institute of Medical Information, Chinese Academy of Medical Sciences\/Peking Union Medical College , Beijing \u00a0100020,\u00a0 China"}]},{"given":"Li","family":"Hou","sequence":"additional","affiliation":[{"name":"Institute of Medical Information, Chinese Academy of Medical Sciences\/Peking Union Medical College , Beijing \u00a0100020,\u00a0 China"}]},{"given":"Yunfei","family":"Shang","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"University of Chinese Academy of Sciences , Beijing \u00a0100049,\u00a0 China"}]},{"given":"Qiheng","family":"Qain","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"University of Chinese Academy of Sciences , Beijing \u00a0100049,\u00a0 China"}]},{"given":"Jie","family":"Liu","sequence":"additional","affiliation":[{"name":"North China University of Science and Technology Affiliated Hospital , Tangshan \u00a0063000,\u00a0 China"}]},{"given":"Meiye","family":"Jiang","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"University of Chinese Academy of Sciences , Beijing \u00a0100049,\u00a0 China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8873-9229","authenticated-orcid":false,"given":"Hao","family":"Zhang","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"University of Chinese Academy of Sciences , Beijing \u00a0100049,\u00a0 China"}]},{"given":"Congfan","family":"Bu","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"}]},{"given":"Jinyue","family":"Wang","sequence":"additional","affiliation":[{"name":"Institute of Biophysics, Chinese Academy of Sciences , Beijing \u00a0100101,\u00a0 China"}]},{"given":"Zhewen","family":"Zhang","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"}]},{"given":"Zaichao","family":"Zhang","sequence":"additional","affiliation":[{"name":"Department of Biology, The University of Western Ontario ,\u00a0 London ,\u00a0 Ontario N6A 5B7 , Canada"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7364-9677","authenticated-orcid":false,"given":"Jingyao","family":"Zeng","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"}]},{"given":"Jiao","family":"Li","sequence":"additional","affiliation":[{"name":"Institute of Medical Information, Chinese Academy of Medical Sciences\/Peking Union Medical College , Beijing \u00a0100020,\u00a0 China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2835-4340","authenticated-orcid":false,"given":"Jingfa","family":"Xiao","sequence":"additional","affiliation":[{"name":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101,\u00a0 China"},{"name":"University of Chinese Academy of Sciences , Beijing \u00a0100049,\u00a0 China"}]}],"member":"286","published-online":{"date-parts":[[2022,10,16]]},"reference":[{"key":"2023010804240696200_B1","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1038\/ng.3506","article-title":"Integrative approaches for large-scale transcriptome-wide association studies","volume":"48","author":"Gusev","year":"2016","journal-title":"Nat. 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Genet."},{"key":"2023010804240696200_B5","doi-asserted-by":"crossref","first-page":"713230","DOI":"10.3389\/fgene.2021.713230","article-title":"From GWAS to gene: transcriptome-wide association studies and other methods to functionally understand GWAS discoveries","volume":"12","author":"Li","year":"2021","journal-title":"Front. Genet."},{"key":"2023010804240696200_B6","doi-asserted-by":"crossref","first-page":"e1009405","DOI":"10.1371\/journal.pgen.1009405","article-title":"Power analysis of transcriptome-wide association study: implications for practical protocol choice","volume":"17","author":"Cao","year":"2021","journal-title":"PLos Genet."},{"key":"2023010804240696200_B7","doi-asserted-by":"crossref","first-page":"592","DOI":"10.1038\/s41588-019-0385-z","article-title":"Opportunities and challenges for transcriptome-wide association studies","volume":"51","author":"Wainberg","year":"2019","journal-title":"Nat. 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