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IAnimal (https:\/\/ianimal.pro\/), a cross-species, multi-omics knowledgebase, was developed to improve the utilization of massive public data and simplify the integration of multi-omics information to mine the genetic mechanisms of objective traits. Currently, IAnimal provides 61 191 individual omics data of genome (WGS), transcriptome (RNA-Seq), epigenome (ChIP-Seq, ATAC-Seq)\u00a0and genome annotation information for 21 species, such as mice, pigs, cattle, chickens, and macaques. The scale of its total clean data has reached 846.46 TB. To better understand the biological significance of omics information, a deep learning model for IAnimal was built based on BioBERT and AutoNER to mine \u2018gene\u2019 and \u2018trait\u2019 entities from 2 794 237 abstracts, which has practical significance for comprehending how each omics layer regulates genes to affect traits. By means of user-friendly web interfaces, flexible data application programming interfaces, and abundant functional modules, IAnimal enables users to easily query, mine, and visualize characteristics in various omics, and to infer how genes play biological roles under the influence of various omics layers.<\/jats:p>","DOI":"10.1093\/nar\/gkac936","type":"journal-article","created":{"date-parts":[[2022,10,27]],"date-time":"2022-10-27T10:49:45Z","timestamp":1666867785000},"page":"D1312-D1324","source":"Crossref","is-referenced-by-count":36,"title":["IAnimal: a cross-species omics knowledgebase for animals"],"prefix":"10.1093","volume":"51","author":[{"given":"Yuhua","family":"Fu","sequence":"first","affiliation":[{"name":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan, 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