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As an increasing number of datasets are generated in the public domain, in this update, TISCH2 has included 190 tumor scRNA-seq datasets covering 6 million cells in 50 cancer types, with 110 newly collected datasets and almost tripling the number of cells compared with the previous release. Furthermore, TISCH2 includes several new functions that allow users to better utilize the large-scale scRNA-seq datasets. First, in the Dataset module, TISCH2 provides the cell\u2013cell communication results in each dataset, facilitating the analyses of interacted cell types and the discovery of significant ligand\u2013receptor pairs between cell types. TISCH2 also includes the transcription factor analyses for each dataset and visualization of the top enriched transcription factors of each cell type. Second, in the Gene module, TISCH2 adds functions for identifying correlated genes and providing survival information for the input genes. In summary, TISCH2 is a user-friendly, up-to-date and well-maintained data resource for gene expression analyses in the TME. TISCH2 is freely available at http:\/\/tisch.comp-genomics.org\/.<\/jats:p>","DOI":"10.1093\/nar\/gkac959","type":"journal-article","created":{"date-parts":[[2022,11,2]],"date-time":"2022-11-02T12:04:42Z","timestamp":1667390682000},"page":"D1425-D1431","source":"Crossref","is-referenced-by-count":533,"title":["TISCH2: expanded datasets and new tools for single-cell transcriptome analyses of the tumor microenvironment"],"prefix":"10.1093","volume":"51","author":[{"given":"Ya","family":"Han","sequence":"first","affiliation":[{"name":"Shanghai Putuo District People's Hospital, School of Life Sciences and Technology, Tongji University, \u00a0Shanghai 200092 , China"},{"name":"Frontier Science Center for Stem Cells, School of Life Sciences and Technology, Tongji University , Shanghai \u00a0200092, China"}]},{"given":"Yuting","family":"Wang","sequence":"additional","affiliation":[{"name":"Shanghai Putuo District People's Hospital, School of Life Sciences and Technology, Tongji University, 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