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Since the last release in 2018, there has been a huge increase in the number of variants and lncRNAs. Thus, we updated the lncRNASNP to version 3 by expanding the species to eight eukaryotic species (human, chimpanzee, pig, mouse, rat, chicken, zebrafish, and fruitfly), updating the data\u00a0and adding several new features. SNPs in lncRNASNP have increased from 11 181 387 to 67 513 785. The human mutations have increased from 1 174 768 to 2 387 685, including 1 031 639 TCGA mutations and 1 356 046 CosmicNCVs. Compared with the last release, updated and new features in lncRNASNP v3 include (i) SNPs in lncRNAs and their impacts on lncRNAs for eight species, (ii) SNP effects on miRNA\u2212lncRNA interactions for eight species, (iii) lncRNA expression profiles for six species, (iv) disease &amp; GWAS-associated lncRNAs and variants, (v) experimental &amp; predicted lncRNAs and drug target associations and (vi) SNP effects on lncRNA expression (eQTL) across tumor &amp; normal tissues. The lncRNASNP v3 is freely available at http:\/\/gong_lab.hzau.edu.cn\/lncRNASNP3\/.<\/jats:p>","DOI":"10.1093\/nar\/gkac981","type":"journal-article","created":{"date-parts":[[2022,11,9]],"date-time":"2022-11-09T16:38:44Z","timestamp":1668011924000},"page":"D192-D198","source":"Crossref","is-referenced-by-count":48,"title":["lncRNASNP v3: an updated database for functional variants in long non-coding RNAs"],"prefix":"10.1093","volume":"51","author":[{"given":"Yanbo","family":"Yang","sequence":"first","affiliation":[{"name":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University , Wuhan \u00a0430070, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dongyang","family":"Wang","sequence":"additional","affiliation":[{"name":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University , Wuhan \u00a0430070, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ya-Ru","family":"Miao","sequence":"additional","affiliation":[{"name":"Hubei Bioinformatics and Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan \u00a0430074, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiaohong","family":"Wu","sequence":"additional","affiliation":[{"name":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University , Wuhan \u00a0430070, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Haohui","family":"Luo","sequence":"additional","affiliation":[{"name":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University , Wuhan \u00a0430070, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wen","family":"Cao","sequence":"additional","affiliation":[{"name":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University , Wuhan \u00a0430070, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wenqian","family":"Yang","sequence":"additional","affiliation":[{"name":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University , Wuhan \u00a0430070, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jianye","family":"Yang","sequence":"additional","affiliation":[{"name":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University , Wuhan \u00a0430070, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5099-7465","authenticated-orcid":false,"given":"An-Yuan","family":"Guo","sequence":"additional","affiliation":[{"name":"Hubei Bioinformatics and Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan \u00a0430074, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1895-2993","authenticated-orcid":false,"given":"Jing","family":"Gong","sequence":"additional","affiliation":[{"name":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University , Wuhan \u00a0430070, China"},{"name":"College of Biomedicine and Health, Huazhong Agricultural University , Wuhan \u00a0430070, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2022,11,9]]},"reference":[{"key":"2023010804305900000_B1","doi-asserted-by":"crossref","first-page":"e1003569","DOI":"10.1371\/journal.pgen.1003569","article-title":"Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs","volume":"9","author":"Hangauer","year":"2013","journal-title":"PLoS Genet."},{"key":"2023010804305900000_B2","doi-asserted-by":"crossref","first-page":"D165","DOI":"10.1093\/nar\/gkaa1046","article-title":"NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants","volume":"49","author":"Zhao","year":"2021","journal-title":"Nucleic Acids Res."},{"key":"2023010804305900000_B3","doi-asserted-by":"crossref","first-page":"96","DOI":"10.1038\/s41580-020-00315-9","article-title":"Gene regulation by long non-coding RNAs and its biological functions","volume":"22","author":"Statello","year":"2021","journal-title":"Nat. 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