{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,1]],"date-time":"2026-06-01T12:24:03Z","timestamp":1780316643021,"version":"3.54.1"},"reference-count":31,"publisher":"Oxford University Press (OUP)","issue":"W1","license":[{"start":{"date-parts":[[2023,5,17]],"date-time":"2023-05-17T00:00:00Z","timestamp":1684281600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001824","name":"Czech Science Foundation","doi-asserted-by":"publisher","award":["22-30571M"],"award-info":[{"award-number":["22-30571M"]}],"id":[{"id":"10.13039\/501100001824","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100009122","name":"Ministry of Education","doi-asserted-by":"publisher","award":["LM2023055"],"award-info":[{"award-number":["LM2023055"]}],"id":[{"id":"10.13039\/100009122","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100010653","name":"Masaryk University","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100010653","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,7,5]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Segmentation helps interpret imaging data in a biological context. With the development of powerful tools for automated segmentation, public repositories for imaging data have added support for sharing and visualizing segmentations, creating the need for interactive web-based visualization of 3D volume segmentations. To address the ongoing challenge of integrating and visualizing multimodal data, we developed Mol* Volumes and Segmentations (Mol*VS), which enables the interactive, web-based visualization of cellular imaging data supported by macromolecular data and biological annotations. Mol*VS is fully integrated into Mol* Viewer, which is already used for visualization by several public repositories. All EMDB and EMPIAR entries with segmentation datasets are accessible via Mol*VS, which supports the visualization of data from a wide range of electron and light microscopy experiments. Additionally, users can run a local instance of Mol*VS to visualize and share custom datasets in generic or application-specific formats including volumes in .ccp4, .mrc, and .map, and segmentations in EMDB-SFF .hff, Amira .am, iMod .mod, and Segger .seg. Mol*VS is open source and freely available at https:\/\/molstarvolseg.ncbr.muni.cz\/.<\/jats:p>","DOI":"10.1093\/nar\/gkad411","type":"journal-article","created":{"date-parts":[[2023,5,17]],"date-time":"2023-05-17T10:54:35Z","timestamp":1684320875000},"page":"W326-W330","source":"Crossref","is-referenced-by-count":2,"title":["Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations"],"prefix":"10.1093","volume":"51","author":[{"given":"Aliaksei","family":"Chareshneu","sequence":"first","affiliation":[{"name":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adam","family":"Midlik","sequence":"additional","affiliation":[{"name":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic"},{"name":"Biological Data Management and Analysis Core Facility, Centre for Structural Biology, CEITEC \u2013 Central European Institute of Technology, Masaryk University , 625 00 Brno, Czech Republic"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Crina-Maria","family":"Ionescu","sequence":"additional","affiliation":[{"name":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexander","family":"Rose","sequence":"additional","affiliation":[{"name":"Mol* Consortium , San Diego, CA 92109, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9252-5386","authenticated-orcid":false,"given":"Vladim\u00edr","family":"Horsk\u00fd","sequence":"additional","affiliation":[{"name":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic"},{"name":"Biological Data Management and 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