{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,6]],"date-time":"2024-09-06T09:42:00Z","timestamp":1725615720896},"reference-count":33,"publisher":"Oxford University Press (OUP)","issue":"suppl_2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007,7]]},"DOI":"10.1093\/nar\/gkm346","type":"journal-article","created":{"date-parts":[[2007,5,22]],"date-time":"2007-05-22T15:48:40Z","timestamp":1179848920000},"page":"W561-W567","source":"Crossref","is-referenced-by-count":39,"title":["3D-partner: a web server to infer interacting partners and binding models"],"prefix":"10.1093","volume":"35","author":[{"given":"Yung-Chiang","family":"Chen","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yu-Shu","family":"Lo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wen-Chang","family":"Hsu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jinn-Moon","family":"Yang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2007,7]]},"reference":[{"key":"key\n\t\t\t\t20170510123013_B1","doi-asserted-by":"crossref","first-page":"1815","DOI":"10.1016\/j.febslet.2005.02.005","article-title":"Pathway information for systems biology","volume":"579","author":"Cary","year":"2005","journal-title":"FEBS Lett"},{"key":"key\n\t\t\t\t20170510123013_B2","doi-asserted-by":"crossref","first-page":"4569","DOI":"10.1073\/pnas.061034498","article-title":"A comprehensive two-hybrid analysis to explore the yeast protein interactome","volume":"98","author":"Ito","year":"2001","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"key\n\t\t\t\t20170510123013_B3","doi-asserted-by":"crossref","first-page":"837","DOI":"10.1038\/35015709","article-title":"Proteomics to study genes and genomes","volume":"405","author":"Pandey","year":"2000","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170510123013_B4","doi-asserted-by":"crossref","first-page":"399","DOI":"10.1038\/nature750","article-title":"Comparative assessment of large-scale data sets of protein-protein interactions","volume":"417","author":"von Mering","year":"2002","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170510123013_B5","doi-asserted-by":"crossref","first-page":"449","DOI":"10.1126\/science.1087361","article-title":"A Bayesian networks approach for predicting protein-protein interactions from genomic data","volume":"302","author":"Jansen","year":"2003","journal-title":"Science"},{"key":"key\n\t\t\t\t20170510123013_B6","doi-asserted-by":"crossref","first-page":"923","DOI":"10.1093\/bioinformatics\/btg118","article-title":"Integrative approach for computationally inferring protein domain interactions","volume":"19","author":"Ng","year":"2003","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170510123013_B7","doi-asserted-by":"crossref","first-page":"R125","DOI":"10.1186\/gb-2006-7-12-r125","article-title":"Evolutionary conservation of domain-domain interactions","volume":"7","author":"Itzhaki","year":"2006","journal-title":"Genome Biol"},{"key":"key\n\t\t\t\t20170510123013_B8","doi-asserted-by":"crossref","first-page":"1540","DOI":"10.1101\/gr.153002","article-title":"Inferring domain-domain interactions from protein-protein interactions","volume":"12","author":"Deng","year":"2002","journal-title":"Genome Res"},{"key":"key\n\t\t\t\t20170510123013_B9","doi-asserted-by":"crossref","first-page":"4285","DOI":"10.1073\/pnas.96.8.4285","article-title":"Assigning protein functions by comparative genome analysis: protein phylogenetic profiles","volume":"96","author":"Pellegrini","year":"1999","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20170510123013_B10","doi-asserted-by":"crossref","first-page":"5896","DOI":"10.1073\/pnas.092147999","article-title":"Interrogating protein interaction networks through structural biology","volume":"99","author":"Aloy","year":"2002","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20170510123013_B11","doi-asserted-by":"crossref","first-page":"1146","DOI":"10.1101\/gr.1145203","article-title":"Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome","volume":"13","author":"Lu","year":"2003","journal-title":"Genome Res"},{"key":"key\n\t\t\t\t20170510123013_B12","doi-asserted-by":"crossref","first-page":"2120","DOI":"10.1101\/gr.205301","article-title":"Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or \u201cinterologs\u201d","volume":"11","author":"Matthews","year":"2001","journal-title":"Genome Res"},{"key":"key\n\t\t\t\t20170510123013_B13","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1186\/1471-2105-7-2","article-title":"Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis","volume":"7","author":"Jonsson","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170510123013_B14","doi-asserted-by":"crossref","first-page":"2026","DOI":"10.1126\/science.1092645","article-title":"Structure-based assembly of protein complexes in yeast","volume":"303","author":"Aloy","year":"2004","journal-title":"Science"},{"key":"key\n\t\t\t\t20170510123013_B15","doi-asserted-by":"crossref","first-page":"350","DOI":"10.1002\/prot.10222","article-title":"MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading","volume":"49","author":"Lu","year":"2002","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20170510123013_B16","first-page":"206","article-title":"DAPID: a 3D-domain annotated protein-protein interaction database","volume":"17","author":"Chen","year":"2006","journal-title":"Genome Informatics"},{"key":"key\n\t\t\t\t20170510123013_B17","doi-asserted-by":"crossref","first-page":"365","DOI":"10.1093\/nar\/gkg095","article-title":"The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003","volume":"31","author":"Boeckmann","year":"2003","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170510123013_B18","doi-asserted-by":"crossref","first-page":"284","DOI":"10.1093\/bioinformatics\/17.3.284","article-title":"ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions","volume":"17","author":"Thorn","year":"2001","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170510123013_B19","doi-asserted-by":"crossref","first-page":"D233","DOI":"10.1093\/nar\/gki057","article-title":"The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema","volume":"33","author":"Deshpande","year":"2005","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170510123013_B20","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1016\/S0022-2836(02)01223-8","article-title":"Analysing six types of protein-protein interfaces","volume":"325","author":"Ofran","year":"2003","journal-title":"J. Mol. Biol"},{"key":"key\n\t\t\t\t20170510123013_B21","doi-asserted-by":"crossref","first-page":"929","DOI":"10.1006\/jmbi.2001.4526","article-title":"Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast","volume":"307","author":"Park","year":"2001","journal-title":"J. Mol. Biol"},{"key":"key\n\t\t\t\t20170510123013_B22","doi-asserted-by":"crossref","first-page":"D226","DOI":"10.1093\/nar\/gkh039","article-title":"SCOP database in 2004: refinements integrate structure and sequence family data","volume":"32","author":"Andreeva","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170510123013_B23","doi-asserted-by":"crossref","first-page":"D187","DOI":"10.1093\/nar\/gkj161","article-title":"The Universal Protein Resource (UniProt): an expanding universe of protein information","volume":"34","author":"Wu","year":"2006","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170510123013_B24","doi-asserted-by":"crossref","first-page":"10915","DOI":"10.1073\/pnas.89.22.10915","article-title":"Amino acid substitution matrices from protein blocks","volume":"89","author":"Henikoff","year":"1992","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20170510123013_B25","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1002\/1097-0134(20010501)43:2<89::AID-PROT1021>3.0.CO;2-H","article-title":"Residue frequencies and pairing preferences at protein-protein interfaces","volume":"43","author":"Glaser","year":"2001","journal-title":"Proteins: Struct. Funct. Bioinformatics"},{"key":"key\n\t\t\t\t20170510123013_B26","doi-asserted-by":"crossref","first-page":"1055","DOI":"10.1038\/80981","article-title":"The structure of the central stalk in bovine F(1)-ATPase at 2.4\u2009A resolution","volume":"7","author":"Gibbons","year":"2000","journal-title":"Nat. Struct. Biol"},{"key":"key\n\t\t\t\t20170510123013_B27","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1074\/jbc.274.1.36","article-title":"ATP synthase of yeast mitochondria. Isolation of subunit j and disruption of the ATP18 gene","volume":"274","author":"Arnold","year":"1999","journal-title":"J. Biol. Chem"},{"key":"key\n\t\t\t\t20170510123013_B28","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1023\/A:1005443609985","article-title":"The role of the amino-terminal beta-barrel domain of the alpha and beta subunits in the yeast F1-ATPase","volume":"31","author":"Yao","year":"1999","journal-title":"J. Bioenerg. Biomembr"},{"key":"key\n\t\t\t\t20170510123013_B29","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1007\/BF00762843","article-title":"Regulatory proteins of F1F0-ATPase: role of ATPase inhibitor","volume":"22","author":"Hashimoto","year":"1990","journal-title":"J. Bioenerg. Biomembr"},{"key":"key\n\t\t\t\t20170510123013_B30","doi-asserted-by":"crossref","first-page":"744","DOI":"10.1038\/nsb966","article-title":"The structure of bovine F1-ATPase in complex with its regulatory protein IF1","volume":"10","author":"Cabezon","year":"2003","journal-title":"Nat. Struct. Biol"},{"key":"key\n\t\t\t\t20170510123013_B31","doi-asserted-by":"crossref","first-page":"D258","DOI":"10.1093\/nar\/gkh036","article-title":"The Gene Ontology (GO) database and informatics resource","volume":"32","author":"Harris","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170510123013_B32","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1038\/43025","article-title":"Genetic and physical maps of Saccharomyces cerevisiae","volume":"387","author":"Cherry","year":"1997","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170510123013_B33","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1016\/j.sbi.2005.01.012","article-title":"Protein complexes: structure prediction challenges for the 21st century","volume":"15","author":"Aloy","year":"2005","journal-title":"Curr. Opin. Struct. Biol"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/35\/suppl_2\/W561\/16747220\/gkm346.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,8,24]],"date-time":"2017-08-24T18:16:04Z","timestamp":1503598564000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkm346"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,7]]},"references-count":33,"journal-issue":{"issue":"suppl_2","published-online":{"date-parts":[[2007,7]]},"published-print":{"date-parts":[[2007,7]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkm346","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published":{"date-parts":[[2007,7]]}}}