{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,7]],"date-time":"2026-02-07T02:51:44Z","timestamp":1770432704349,"version":"3.49.0"},"reference-count":16,"publisher":"Oxford University Press (OUP)","issue":"suppl_1","license":[{"start":{"date-parts":[[2016,11,14]],"date-time":"2016-11-14T00:00:00Z","timestamp":1479081600000},"content-version":"vor","delay-in-days":3255,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,1,1]]},"DOI":"10.1093\/nar\/gkm979","type":"journal-article","created":{"date-parts":[[2007,12,18]],"date-time":"2007-12-18T02:18:23Z","timestamp":1197944303000},"page":"D825-D829","source":"Crossref","is-referenced-by-count":50,"title":["Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases"],"prefix":"10.1093","volume":"36","author":[{"given":"Joke","family":"Reumers","sequence":"first","affiliation":[]},{"given":"Lucia","family":"Conde","sequence":"additional","affiliation":[]},{"given":"Ignacio","family":"Medina","sequence":"additional","affiliation":[]},{"given":"Sebastian","family":"Maurer-Stroh","sequence":"additional","affiliation":[]},{"given":"Joost","family":"Van Durme","sequence":"additional","affiliation":[]},{"given":"Joaquin","family":"Dopazo","sequence":"additional","affiliation":[]},{"given":"Frederic","family":"Rousseau","sequence":"additional","affiliation":[]},{"given":"Joost","family":"Schymkowitz","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2007,12,17]]},"reference":[{"key":"key\n\t\t\t\t20170720161834_B1","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1038\/nrg1767","article-title":"Structural variation in the human genome","volume":"7","author":"Feuk","year":"2006","journal-title":"Nat. Rev. Genet."},{"key":"key\n\t\t\t\t20170720161834_B2","doi-asserted-by":"crossref","first-page":"848","DOI":"10.1126\/science.1136678","article-title":"Relative impact of nucleotide and copy number variation on gene expression phenotypes","volume":"315","author":"Stranger","year":"2007","journal-title":"Science"},{"key":"key\n\t\t\t\t20170720161834_B3","doi-asserted-by":"crossref","first-page":"W621","DOI":"10.1093\/nar\/gkl071","article-title":"PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes","volume":"34","author":"Conde","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720161834_B4","doi-asserted-by":"crossref","first-page":"2183","DOI":"10.1093\/bioinformatics\/btl348","article-title":"SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs","volume":"22","author":"Reumers","year":"2006","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170720161834_B5","doi-asserted-by":"crossref","first-page":"D527","DOI":"10.1093\/nar\/gki086","article-title":"SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs","volume":"33","author":"Reumers","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720161834_B6","doi-asserted-by":"crossref","first-page":"W242","DOI":"10.1093\/nar\/gkh438","article-title":"PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level","volume":"32","author":"Conde","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720161834_B7","doi-asserted-by":"crossref","first-page":"W501","DOI":"10.1093\/nar\/gki476","article-title":"PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes","volume":"33","author":"Conde","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720161834_B8","doi-asserted-by":"crossref","first-page":"1606","DOI":"10.1126\/science.272.5268.1606","article-title":"Structural analysis of substrate binding by the molecular chaperone DnaK","volume":"272","author":"Zhu","year":"1996","journal-title":"Science"},{"key":"key\n\t\t\t\t20170720161834_B9","doi-asserted-by":"crossref","first-page":"10147","DOI":"10.1073\/pnas.0501980102","article-title":"Prediction of water and metal binding sites and their affinities by using the Fold-X force field","volume":"102","author":"Schymkowitz","year":"2005","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20170720161834_B10","doi-asserted-by":"crossref","first-page":"829","DOI":"10.1006\/jmbi.1996.0129","article-title":"Regulatory region C of the E. coli heat shock transcription factor, sigma32, constitutes a DnaK binding site and is conserved among eubacteria","volume":"256","author":"McCarty","year":"1996","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20170720161834_B11","doi-asserted-by":"crossref","first-page":"D193","DOI":"10.1093\/nar\/gkl929","article-title":"The Universal Protein Resource (UniProt)","volume":"35","author":"The UniProt Consortium","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170720161834_B12","doi-asserted-by":"crossref","first-page":"D610","DOI":"10.1093\/nar\/gkl996","article-title":"Ensembl 2007","volume":"35","author":"Hubbard","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720161834_B13","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1093\/nar\/29.1.308","article-title":"dbSNP: the NCBI database of genetic variation","volume":"29","author":"Sherry","year":"2001","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720161834_B14","doi-asserted-by":"crossref","first-page":"831","DOI":"10.1016\/j.cell.2004.11.010","article-title":"Systematic identification and analysis of exonic splicing silencers","volume":"119","author":"Wang","year":"2004","journal-title":"Cell"},{"key":"key\n\t\t\t\t20170720161834_B15","doi-asserted-by":"crossref","first-page":"D91","DOI":"10.1093\/nar\/gkh012","article-title":"JASPAR: an open-access database for eukaryotic transcription factor binding profiles","volume":"32","author":"Sandelin","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720161834_B16","doi-asserted-by":"crossref","first-page":"681","DOI":"10.1089\/cmb.1998.5.681","article-title":"Assembling genes from predicted exons in linear time with dynamic programming","volume":"5","author":"Guigo","year":"1998","journal-title":"J. Comput. Biol."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/36\/suppl_1\/D825\/18782184\/gkm979.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:39:54Z","timestamp":1522679994000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkm979"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,12,17]]},"references-count":16,"journal-issue":{"issue":"suppl_1","published-online":{"date-parts":[[2007,12,17]]},"published-print":{"date-parts":[[2008,1,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkm979","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2007,12,17]]}}}