{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,9]],"date-time":"2026-01-09T00:31:41Z","timestamp":1767918701242,"version":"3.49.0"},"reference-count":92,"publisher":"Oxford University Press (OUP)","issue":"suppl_1","license":[{"start":{"date-parts":[[2017,5,10]],"date-time":"2017-05-10T00:00:00Z","timestamp":1494374400000},"content-version":"vor","delay-in-days":2731,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,1]]},"DOI":"10.1093\/nar\/gkp1016","type":"journal-article","created":{"date-parts":[[2009,11,18]],"date-time":"2009-11-18T07:13:23Z","timestamp":1258528403000},"page":"D167-D180","source":"Crossref","is-referenced-by-count":198,"title":["ELM: the status of the 2010 eukaryotic linear motif resource"],"prefix":"10.1093","volume":"38","author":[{"given":"Cathryn M.","family":"Gould","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Francesca","family":"Diella","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Allegra","family":"Via","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"P\u00e5l","family":"Puntervoll","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christine","family":"Gem\u00fcnd","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sophie","family":"Chabanis-Davidson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sushama","family":"Michael","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ahmed","family":"Sayadi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jan Christian","family":"Bryne","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Claudia","family":"Chica","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Markus","family":"Seiler","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Norman E.","family":"Davey","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Niall","family":"Haslam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robert J.","family":"Weatheritt","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Aidan","family":"Budd","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tim","family":"Hughes","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jakub","family":"Pa\u015b","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Leszek","family":"Rychlewski","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gilles","family":"Trav\u00e9","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rein","family":"Aasland","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Manuela","family":"Helmer-Citterich","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rune","family":"Linding","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Toby J.","family":"Gibson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2009,11,17]]},"reference":[{"key":"key\n\t\t\t\t20170408055748_B1","doi-asserted-by":"crossref","first-page":"6580","DOI":"10.2741\/3175","article-title":"Understanding eukaryotic linear motifs and their role in cell signaling and regulation","volume":"13","author":"Diella","year":"2008","journal-title":"Front. Biosci."},{"key":"key\n\t\t\t\t20170408055748_B2","doi-asserted-by":"crossref","first-page":"465","DOI":"10.1016\/j.copbio.2006.08.002","article-title":"Peptides mediating interaction networks: new leads at last","volume":"17","author":"Neduva","year":"2006","journal-title":"Curr. Opin. Biotechnol."},{"key":"key\n\t\t\t\t20170408055748_B3","doi-asserted-by":"crossref","first-page":"6455","DOI":"10.2741\/3166","article-title":"Viral infection and human disease\u2014insights from minimotifs","volume":"13","author":"Kadaveru","year":"2008","journal-title":"Front. Biosci."},{"key":"key\n\t\t\t\t20170408055748_B4","doi-asserted-by":"crossref","first-page":"1143","DOI":"10.2741\/3299","article-title":"Structural conservation of a short, functional, peptide-sequence motif","volume":"14","author":"Fox-Erlich","year":"2009","journal-title":"Front. Biosci."},{"key":"key\n\t\t\t\t20170408055748_B5","doi-asserted-by":"crossref","first-page":"344","DOI":"10.1016\/j.copbio.2008.06.004","article-title":"Peptide-mediated interactions in biological systems: new discoveries and applications","volume":"19","author":"Petsalaki","year":"2008","journal-title":"Curr. Opin. Biotechnol."},{"key":"key\n\t\t\t\t20170408055748_B6","doi-asserted-by":"crossref","first-page":"1092","DOI":"10.1126\/science.1151804","article-title":"A shared docking motif in TRF1 and TRF2 used for differential recruitment of telomeric proteins","volume":"319","author":"Chen","year":"2008","journal-title":"Science"},{"key":"key\n\t\t\t\t20170408055748_B7","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1016\/j.ejcb.2005.08.003","article-title":"RGD, the Rho'd; to cell spreading","volume":"85","author":"Salsmann","year":"2006","journal-title":"Eur. J. Cell Biol."},{"key":"key\n\t\t\t\t20170408055748_B8","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1126\/science.1083653","article-title":"Assembly of cell regulatory systems through protein interaction domains","volume":"300","author":"Pawson","year":"2003","journal-title":"Science"},{"key":"key\n\t\t\t\t20170408055748_B9","doi-asserted-by":"crossref","first-page":"8311","DOI":"10.1073\/pnas.0700329104","article-title":"Intrinsic disorder as a mechanism to optimize allosteric coupling in proteins","volume":"104","author":"Hilser","year":"2007","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20170408055748_B10","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1016\/j.sbi.2008.12.003","article-title":"Linking folding and binding","volume":"19","author":"Wright","year":"2009","journal-title":"Curr. Opin. Struct. Biol."},{"key":"key\n\t\t\t\t20170408055748_B11","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1186\/jbiol185","article-title":"Molecular machines or pleiomorphic ensembles: signaling complexes revisited","volume":"8","author":"Mayer","year":"2009","journal-title":"J. Biol."},{"key":"key\n\t\t\t\t20170408055748_B12","doi-asserted-by":"crossref","first-page":"5390","DOI":"10.1111\/j.1742-4658.2009.07251.x","article-title":"Dynamic interactions of proteins in complex networks: a more structured view","volume":"276","author":"Stein","year":"2009","journal-title":"FEBS J."},{"key":"key\n\t\t\t\t20170408055748_B13","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1038\/msb4100179","article-title":"Towards a theory of biological robustness","volume":"3","author":"Kitano","year":"2007","journal-title":"Mol. Syst. Biol."},{"key":"key\n\t\t\t\t20170408055748_B14","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1016\/j.ceb.2009.02.005","article-title":"Kinome signaling through regulated protein-protein interactions in normal and cancer cells","volume":"21","author":"Pawson","year":"2009","journal-title":"Curr. Opin. Cell Biol."},{"key":"key\n\t\t\t\t20170408055748_B15","doi-asserted-by":"crossref","first-page":"198","DOI":"10.1126\/science.1169377","article-title":"Sending signals dynamically","volume":"324","author":"Smock","year":"2009","journal-title":"Science"},{"key":"key\n\t\t\t\t20170408055748_B16","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1016\/j.pneurobio.2008.07.001","article-title":"Protein cooperation: from neurons to networks","volume":"86","author":"Volonte","year":"2008","journal-title":"Prog. Neurobiol."},{"key":"key\n\t\t\t\t20170408055748_B17","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1038\/nchembio0808-435","article-title":"Cooperativity and biological complexity","volume":"4","author":"Whitty","year":"2008","journal-title":"Nat. Chem. Biol."},{"key":"key\n\t\t\t\t20170408055748_B18","doi-asserted-by":"crossref","first-page":"458","DOI":"10.1038\/nchembio.102","article-title":"Cooperativity in macromolecular assembly","volume":"4","author":"Williamson","year":"2008","journal-title":"Nat. Chem. Biol."},{"key":"key\n\t\t\t\t20170408055748_B19","doi-asserted-by":"crossref","first-page":"ra39","DOI":"10.1126\/scisignal.2000316","article-title":"Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases","volume":"2","author":"Tan","year":"2009","journal-title":"Sci. Signal."},{"key":"key\n\t\t\t\t20170408055748_B20","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1016\/j.tibs.2009.06.007","article-title":"Cell regulation: determined to signal discrete cooperation","volume":"34","author":"Gibson","year":"2009","journal-title":"Trends Biochem. Sci."},{"key":"key\n\t\t\t\t20170408055748_B21","doi-asserted-by":"crossref","first-page":"3625","DOI":"10.1093\/nar\/gkg545","article-title":"ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins","volume":"31","author":"Puntervoll","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B22","doi-asserted-by":"crossref","first-page":"D185","DOI":"10.1093\/nar\/gkn865","article-title":"Minimotif miner 2nd release: a database and web system for motif search","volume":"37","author":"Rajasekaran","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B23","doi-asserted-by":"crossref","first-page":"1551","DOI":"10.1002\/pmic.200300772","article-title":"PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation","volume":"4","author":"Hornbeck","year":"2004","journal-title":"Proteomics"},{"key":"key\n\t\t\t\t20170408055748_B24","doi-asserted-by":"crossref","first-page":"D240","DOI":"10.1093\/nar\/gkm772","article-title":"Phospho.ELM: a database of phosphorylation sites\u2014update 2008","volume":"36","author":"Diella","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B25","doi-asserted-by":"crossref","first-page":"R250","DOI":"10.1186\/gb-2007-8-11-r250","article-title":"PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites","volume":"8","author":"Gnad","year":"2007","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170408055748_B26","doi-asserted-by":"crossref","first-page":"D767","DOI":"10.1093\/nar\/gkn892","article-title":"Human Protein Reference Database\u20142009 update","volume":"37","author":"Keshava Prasad","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B27","doi-asserted-by":"crossref","first-page":"D169","DOI":"10.1093\/nar\/gkn664","article-title":"The Universal Protein Resource (UniProt) 2009","volume":"37","author":"UniProt Consortium","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B28","doi-asserted-by":"crossref","first-page":"950","DOI":"10.1093\/bioinformatics\/btm035","article-title":"Local structural disorder imparts plasticity on linear motifs","volume":"23","author":"Fuxreiter","year":"2007","journal-title":"Bioinformatics"},{"issue":"Suppl. 2","key":"key\n\t\t\t\t20170408055748_B29","doi-asserted-by":"crossref","first-page":"S26","DOI":"10.1186\/1471-2164-9-S2-S26","article-title":"Short Linear Motifs recognized by SH2, SH3 and Ser\/Thr Kinase domains are conserved in disordered protein regions","volume":"9","author":"Ren","year":"2008","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20170408055748_B30","doi-asserted-by":"crossref","first-page":"1271","DOI":"10.1016\/j.febslet.2008.02.027","article-title":"A careful disorderliness in the proteome: sites for interaction and targets for future therapies","volume":"582","author":"Russell","year":"2008","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20170408055748_B31","doi-asserted-by":"crossref","first-page":"135","DOI":"10.2174\/138920307780363451","article-title":"Predicting protein disorder and induced folding: from theoretical principles to practical applications","volume":"8","author":"Bourhis","year":"2007","journal-title":"Curr. Protein Pept. Sci."},{"key":"key\n\t\t\t\t20170408055748_B32","doi-asserted-by":"crossref","first-page":"929","DOI":"10.1038\/cr.2009.87","article-title":"Predicting intrinsic disorder in proteins: an overview","volume":"19","author":"He","year":"2009","journal-title":"Cell Res."},{"key":"key\n\t\t\t\t20170408055748_B33","doi-asserted-by":"crossref","first-page":"D281","DOI":"10.1093\/nar\/gkm960","article-title":"The Pfam protein families database","volume":"36","author":"Finn","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B34","doi-asserted-by":"crossref","first-page":"D229","DOI":"10.1093\/nar\/gkn808","article-title":"SMART 6: recent updates and new developments","volume":"37","author":"Letunic","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B35","doi-asserted-by":"crossref","first-page":"D245","DOI":"10.1093\/nar\/gkm977","article-title":"The 20 years of PROSITE","volume":"36","author":"Hulo","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B36","doi-asserted-by":"crossref","first-page":"D211","DOI":"10.1093\/nar\/gkn785","article-title":"InterPro: the integrative protein signature database","volume":"37","author":"Hunter","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B37","doi-asserted-by":"crossref","first-page":"3297","DOI":"10.1093\/bioinformatics\/btm524","article-title":"A computational strategy for the prediction of functional linear peptide motifs in proteins","volume":"23","author":"Dinkel","year":"2007","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B38","doi-asserted-by":"crossref","first-page":"e967","DOI":"10.1371\/journal.pone.0000967","article-title":"SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins","volume":"2","author":"Edwards","year":"2007","journal-title":"PLoS ONE"},{"key":"key\n\t\t\t\t20170408055748_B39","doi-asserted-by":"crossref","first-page":"W350","DOI":"10.1093\/nar\/gkl159","article-title":"DILIMOT: discovery of linear motifs in proteins","volume":"34","author":"Neduva","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B40","doi-asserted-by":"crossref","first-page":"e1000335","DOI":"10.1371\/journal.pcbi.1000335","article-title":"Accurate prediction of peptide binding sites on protein surfaces","volume":"5","author":"Petsalaki","year":"2009","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20170408055748_B41","doi-asserted-by":"crossref","first-page":"351","DOI":"10.1186\/1471-2105-10-351","article-title":"A structure filter for the Eukaryotic Linear Motif Resource","volume":"10","author":"Via","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B42","first-page":"305","article-title":"Protein sequence motifs involved in recognition and targeting: a new series","volume":"15","author":"Hunt","year":"1990","journal-title":"Trends Biochem. Sci."},{"key":"key\n\t\t\t\t20170408055748_B43","doi-asserted-by":"crossref","first-page":"483","DOI":"10.1016\/0968-0004(90)90303-S","article-title":"The retention signal for soluble proteins of the endoplasmic reticulum","volume":"15","author":"Pelham","year":"1990","journal-title":"Trends Biochem. Sci."},{"key":"key\n\t\t\t\t20170408055748_B44","doi-asserted-by":"crossref","first-page":"478","DOI":"10.1016\/0968-0004(91)90184-W","article-title":"Nuclear targeting sequences \u2013 a consensus?","volume":"16","author":"Dingwall","year":"1991","journal-title":"Trends Biochem. Sci."},{"key":"key\n\t\t\t\t20170408055748_B45","doi-asserted-by":"crossref","first-page":"132","DOI":"10.1038\/349132a0","article-title":"Cyclin is degraded by the ubiquitin pathway","volume":"349","author":"Glotzer","year":"1991","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170408055748_B46","doi-asserted-by":"crossref","first-page":"305","DOI":"10.1016\/0968-0004(90)90019-8","article-title":"Peptide sequences that target cytosolic proteins for lysosomal proteolysis","volume":"15","author":"Dice","year":"1990","journal-title":"Trends Biochem. Sci."},{"key":"key\n\t\t\t\t20170408055748_B47","doi-asserted-by":"crossref","first-page":"845","DOI":"10.1016\/S0092-8674(03)00191-0","article-title":"A myristoyl\/phosphotyrosine switch regulates c-Abl","volume":"112","author":"Hantschel","year":"2003","journal-title":"Cell"},{"key":"key\n\t\t\t\t20170408055748_B48","doi-asserted-by":"crossref","first-page":"330","DOI":"10.1038\/nsmb741","article-title":"The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3","volume":"11","author":"Kadlec","year":"2004","journal-title":"Nat. Struct. Mol. Biol."},{"key":"key\n\t\t\t\t20170408055748_B49","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/nar\/28.1.235","article-title":"The Protein Data Bank","volume":"28","author":"Berman","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B50","doi-asserted-by":"crossref","first-page":"D440","DOI":"10.1093\/nar\/gkm883","article-title":"The Gene Ontology project in 2008","volume":"36","author":"Gene Ontology Consortium","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B51","doi-asserted-by":"crossref","first-page":"D5","DOI":"10.1093\/nar\/gkn741","article-title":"Database resources of the National Center for Biotechnology Information","volume":"37","author":"Sayers","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B52","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1016\/j.tibs.2008.08.006","article-title":"Capturing protein tails by CAP-Gly domains","volume":"33","author":"Steinmetz","year":"2008","journal-title":"Trends Biochem. Sci."},{"key":"key\n\t\t\t\t20170408055748_B53","first-page":"142","article-title":"cgimodel: CGI programming made easy with Python","volume":"75","author":"Chenna","year":"2000","journal-title":"Linux J."},{"key":"key\n\t\t\t\t20170408055748_B54","doi-asserted-by":"crossref","first-page":"755","DOI":"10.1093\/bioinformatics\/14.9.755","article-title":"Profile hidden Markov models","volume":"14","author":"Eddy","year":"1998","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B55","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1038\/nbt1386","article-title":"What are artificial neural networks?","volume":"26","author":"Krogh","year":"2008","journal-title":"Nat. Biotechnol."},{"key":"key\n\t\t\t\t20170408055748_B56","doi-asserted-by":"crossref","first-page":"144","DOI":"10.1186\/1471-2105-7-144","article-title":"The 3of5 web application for complex and comprehensive pattern matching in protein sequences","volume":"7","author":"Seiler","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B57","doi-asserted-by":"crossref","first-page":"3635","DOI":"10.1093\/nar\/gkg584","article-title":"Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs","volume":"31","author":"Obenauer","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B58","doi-asserted-by":"crossref","first-page":"ra2","DOI":"10.1126\/scisignal.1159433","article-title":"Linear motif atlas for phosphorylation-dependent signaling","volume":"1","author":"Miller","year":"2008","journal-title":"Sci. Signal"},{"key":"key\n\t\t\t\t20170408055748_B59","doi-asserted-by":"crossref","first-page":"2090","DOI":"10.1093\/bioinformatics\/btp329","article-title":"An active registry for bioinformatics web services","volume":"25","author":"Pettifer","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B60","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1186\/1471-2164-10-22","article-title":"BioMart\u2014biological queries made easy","volume":"10","author":"Smedley","year":"2009","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20170408055748_B61","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1186\/1471-2105-9-229","article-title":"A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences","volume":"9","author":"Chica","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B62","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/bioinformatics\/btn594","article-title":"KEPE\u2014a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors","volume":"25","author":"Diella","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B63","doi-asserted-by":"crossref","first-page":"453","DOI":"10.1093\/bioinformatics\/btm624","article-title":"Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation","volume":"24","author":"Michael","year":"2008","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B64","doi-asserted-by":"crossref","first-page":"3986","DOI":"10.1093\/nar\/26.17.3986","article-title":"Protein sequence similarity searches using patterns as seeds","volume":"26","author":"Zhang","year":"1998","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B65","doi-asserted-by":"crossref","first-page":"959","DOI":"10.1038\/nsmb1291","article-title":"Structure-function relationship of CAP-Gly domains","volume":"14","author":"Weisbrich","year":"2007","journal-title":"Nat. Struct. Mol. Biol."},{"key":"key\n\t\t\t\t20170408055748_B66","doi-asserted-by":"crossref","first-page":"558","DOI":"10.1038\/sj.emboj.7601980","article-title":"Structure of the Eps15-stonin2 complex provides a molecular explanation for EH-domain ligand specificity","volume":"27","author":"Rumpf","year":"2008","journal-title":"EMBO J."},{"key":"key\n\t\t\t\t20170408055748_B67","doi-asserted-by":"crossref","first-page":"366","DOI":"10.1016\/j.cell.2009.04.065","article-title":"An EB1-binding motif acts as a microtubule tip localization signal","volume":"138","author":"Honnappa","year":"2009","journal-title":"Cell"},{"key":"key\n\t\t\t\t20170408055748_B68","doi-asserted-by":"crossref","first-page":"620","DOI":"10.1038\/nsmb1260","article-title":"U2AF-homology motif interactions are required for alternative splicing regulation by SPF45","volume":"14","author":"Corsini","year":"2007","journal-title":"Nat. Struct. Mol. Biol."},{"key":"key\n\t\t\t\t20170408055748_B69","doi-asserted-by":"crossref","first-page":"839","DOI":"10.1038\/nsmb1137","article-title":"A peptide motif in Raver1 mediates splicing repression by interaction with the PTB RRM2 domain","volume":"13","author":"Rideau","year":"2006","journal-title":"Nat. Struct. Mol. Biol."},{"key":"key\n\t\t\t\t20170408055748_B70","doi-asserted-by":"crossref","first-page":"329","DOI":"10.1016\/j.devcel.2006.01.016","article-title":"Molecular switches involving the AP-2 beta2 appendage regulate endocytic cargo selection and clathrin coat assembly","volume":"10","author":"Edeling","year":"2006","journal-title":"Dev. Cell"},{"key":"key\n\t\t\t\t20170408055748_B71","doi-asserted-by":"crossref","first-page":"969","DOI":"10.4049\/jimmunol.180.2.969","article-title":"Human cytomegalovirus regulates surface expression of the viral protein UL18 by means of two motifs present in the cytoplasmic tail","volume":"180","author":"Maffei","year":"2008","journal-title":"J. Immunol."},{"key":"key\n\t\t\t\t20170408055748_B72","doi-asserted-by":"crossref","first-page":"1654","DOI":"10.1242\/jcs.049130","article-title":"An integrin-{alpha}4-14-3-3{zeta}-paxillin ternary complex mediates localised Cdc42 activity and accelerates cell migration","volume":"122","author":"Deakin","year":"2009","journal-title":"J. Cell Sci."},{"key":"key\n\t\t\t\t20170408055748_B73","doi-asserted-by":"crossref","first-page":"531","DOI":"10.1016\/j.bbrc.2007.01.189","article-title":"Linear motifs in the C-terminus of D. melanogaster cryptochrome","volume":"355","author":"Hemsley","year":"2007","journal-title":"Biochem. Biophys. Res. Commun."},{"key":"key\n\t\t\t\t20170408055748_B74","doi-asserted-by":"crossref","first-page":"643","DOI":"10.1593\/neo.08176","article-title":"Loss of CHFR in human mammary epithelial cells causes genomic instability by disrupting the mitotic spindle assembly checkpoint","volume":"10","author":"Privette","year":"2008","journal-title":"Neoplasia"},{"key":"key\n\t\t\t\t20170408055748_B75","doi-asserted-by":"crossref","first-page":"1453","DOI":"10.1038\/emboj.2009.114","article-title":"Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division","volume":"28","author":"Theis","year":"2009","journal-title":"EMBO J."},{"key":"key\n\t\t\t\t20170408055748_B76","doi-asserted-by":"crossref","first-page":"e1000376","DOI":"10.1371\/journal.pcbi.1000376","article-title":"Prediction of protein binding regions in disordered proteins","volume":"5","author":"Meszaros","year":"2009","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20170408055748_B77","doi-asserted-by":"crossref","first-page":"e2524","DOI":"10.1371\/journal.pone.0002524","article-title":"Contextual specificity in peptide-mediated protein interactions","volume":"3","author":"Stein","year":"2008","journal-title":"PLoS ONE"},{"key":"key\n\t\t\t\t20170408055748_B78","doi-asserted-by":"crossref","first-page":"e6052","DOI":"10.1371\/journal.pone.0006052","article-title":"Evidence for the concerted evolution between short linear protein motifs and their flanking regions","volume":"4","author":"Chica","year":"2009","journal-title":"PLoS ONE"},{"key":"key\n\t\t\t\t20170408055748_B79","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1186\/1471-2105-9-213","article-title":"A new protein linear motif benchmark for multiple sequence alignment software","volume":"9","author":"Perrodou","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B80","doi-asserted-by":"crossref","first-page":"e405","DOI":"10.1371\/journal.pbio.0030405","article-title":"Systematic discovery of new recognition peptides mediating protein interaction networks","volume":"3","author":"Neduva","year":"2005","journal-title":"PLoS Biol."},{"issue":"Suppl. 4","key":"key\n\t\t\t\t20170408055748_B81","doi-asserted-by":"crossref","first-page":"S13","DOI":"10.1186\/1471-2105-6-S4-S13","article-title":"A neural strategy for the inference of SH3 domain-peptide interaction specificity","volume":"6","author":"Ferraro","year":"2005","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B82","doi-asserted-by":"crossref","first-page":"899","DOI":"10.1016\/j.molcel.2007.05.031","article-title":"High-throughput phosphotyrosine profiling using SH2 domains","volume":"26","author":"Machida","year":"2007","journal-title":"Mol. Cell"},{"key":"key\n\t\t\t\t20170408055748_B83","doi-asserted-by":"crossref","first-page":"36372","DOI":"10.1074\/jbc.M505031200","article-title":"A single pair of acidic residues in the kinase major groove mediates strong substrate preference for P-2 or P-5 arginine in the AGC, CAMK, and STE kinase families","volume":"280","author":"Zhu","year":"2005","journal-title":"J. Biol. Chem."},{"key":"key\n\t\t\t\t20170408055748_B84","doi-asserted-by":"crossref","first-page":"D300","DOI":"10.1093\/nar\/gkn690","article-title":"3did Update: domain-domain and peptide-mediated interactions of known 3D structure","volume":"37","author":"Stein","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B85","doi-asserted-by":"crossref","first-page":"286","DOI":"10.1093\/bib\/bbn013","article-title":"Recent developments in the MAFFT multiple sequence alignment program","volume":"9","author":"Katoh","year":"2008","journal-title":"Brief Bioinform."},{"key":"key\n\t\t\t\t20170408055748_B86","doi-asserted-by":"crossref","first-page":"1189","DOI":"10.1093\/bioinformatics\/btp033","article-title":"Jalview Version 2\u2014a multiple sequence alignment editor and analysis workbench","volume":"25","author":"Waterhouse","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170408055748_B87","doi-asserted-by":"crossref","first-page":"D412","DOI":"10.1093\/nar\/gkn760","article-title":"STRING 8 \u2013 a global view on proteins and their functional interactions in 630 organisms","volume":"37","author":"Jensen","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B88","doi-asserted-by":"crossref","first-page":"D572","DOI":"10.1093\/nar\/gkl950","article-title":"MINT: the Molecular INTeraction database","volume":"35","author":"Chatr-aryamontri","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B89","doi-asserted-by":"crossref","first-page":"D561","DOI":"10.1093\/nar\/gkl958","article-title":"IntAct\u2014open source resource for molecular interaction data","volume":"35","author":"Kerrien","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B90","doi-asserted-by":"crossref","first-page":"169","DOI":"10.1186\/1471-2164-6-169","article-title":"The EH1 motif in metazoan transcription factors","volume":"6","author":"Copley","year":"2005","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20170408055748_B91","doi-asserted-by":"crossref","first-page":"3771","DOI":"10.1093\/nar\/gkg546","article-title":"SIRW: A web server for the Simple Indexing and Retrieval System that combines sequence motif searches with keyword searches","volume":"31","author":"Ramu","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170408055748_B92","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1038\/nbt926","article-title":"The HUPO PSI's; molecular interaction format\u2014a community standard for the representation of protein interaction data","volume":"22","author":"Hermjakob","year":"2004","journal-title":"Nat. Biotechnol."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/38\/suppl_1\/D167\/11217466\/gkp1016.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:40:33Z","timestamp":1522680033000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkp1016"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,11,17]]},"references-count":92,"journal-issue":{"issue":"suppl_1","published-online":{"date-parts":[[2009,11,17]]},"published-print":{"date-parts":[[2010,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkp1016","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,11,17]]}}}