{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,5]],"date-time":"2026-01-05T15:13:51Z","timestamp":1767626031657},"reference-count":50,"publisher":"Oxford University Press (OUP)","issue":"Web Server","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":2721,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Nucleic Acids Research"],"published-print":{"date-parts":[[2009,7,1]]},"DOI":"10.1093\/nar\/gkp254","type":"journal-article","created":{"date-parts":[[2009,4,24]],"date-time":"2009-04-24T01:20:10Z","timestamp":1240536010000},"page":"W435-W440","source":"Crossref","is-referenced-by-count":40,"title":["ANNIE: integrated de novo protein sequence annotation"],"prefix":"10.1093","volume":"37","author":[{"given":"H. S.","family":"Ooi","sequence":"first","affiliation":[]},{"given":"C. Y.","family":"Kwo","sequence":"additional","affiliation":[]},{"given":"M.","family":"Wildpaner","sequence":"additional","affiliation":[]},{"given":"F. L.","family":"Sirota","sequence":"additional","affiliation":[]},{"given":"B.","family":"Eisenhaber","sequence":"additional","affiliation":[]},{"given":"S.","family":"Maurer-Stroh","sequence":"additional","affiliation":[]},{"given":"W. C.","family":"Wong","sequence":"additional","affiliation":[]},{"given":"A.","family":"Schleiffer","sequence":"additional","affiliation":[]},{"given":"F.","family":"Eisenhaber","sequence":"additional","affiliation":[]},{"given":"G.","family":"Schneider","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2009,4,23]]},"reference":[{"issue":"suppl_1","key":"1_30049213","doi-asserted-by":"publisher","first-page":"D25","DOI":"10.1093\/nar\/gkm929","volume":"36","year":"2008","journal-title":"Nucleic Acids Research","ISSN":"http:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"6632 Suppl","key":"2_16797019","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1038\/387067a0","volume":"387","author":"Cherry","year":"1997","journal-title":"Nature; Physical Science (London)","ISSN":"http:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"1","key":"3_28370109","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1534\/genetics.107.074468","volume":"176","year":"2007","journal-title":"Genetics","ISSN":"http:\/\/id.crossref.org\/issn\/0016-6731","issn-type":"print"},{"issue":"1","key":"4_11245429","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1093\/bib\/2.1.19","volume":"2","author":"Ponting","year":"2001","journal-title":"Briefings in Bioinformatics","ISSN":"http:\/\/id.crossref.org\/issn\/1467-5463","issn-type":"print"},{"issue":"4","key":"5_18738278","doi-asserted-by":"publisher","first-page":"827","DOI":"10.1016\/j.jmb.2005.01.071","volume":"347","author":"Doszt\u00a0\u00a0nyi","year":"2005","journal-title":"Journal of molecular biology","ISSN":"http:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"6","key":"6_9768460","doi-asserted-by":"publisher","first-page":"2002","DOI":"10.1073\/pnas.89.6.2002","volume":"89","author":"Brendel","year":"1992","journal-title":"PNAS","ISSN":"http:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"9","key":"7_6300598","doi-asserted-by":"publisher","first-page":"755","DOI":"10.1093\/bioinformatics\/14.9.755","volume":"14","author":"Eddy","year":"1998","journal-title":"Bioinformatics","ISSN":"http:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"suppl_1","key":"8_32444912","doi-asserted-by":"publisher","first-page":"D229","DOI":"10.1093\/nar\/gkn808","volume":"37","year":"2009","journal-title":"Nucleic Acids Research","ISSN":"http:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"key":"9_34647293","first-page":"S1","volume":"84","year":"2007","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"http:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"1","key":"10_11055945","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1093\/bioinformatics\/17.1.73","volume":"17","author":"Letondal","year":"2001","journal-title":"Bioinformatics","ISSN":"http:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"Web Server","key":"11_22356758","doi-asserted-by":"publisher","first-page":"W729","DOI":"10.1093\/nar\/gkl320","volume":"34","author":"Hull","year":"2006","journal-title":"Nucleic Acids Research","ISSN":"http:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"4","key":"12_17391356","doi-asserted-by":"publisher","first-page":"331","DOI":"10.1093\/bib\/3.4.331","volume":"3","author":"Wilkinson","year":"2002","journal-title":"Briefings in Bioinformatics","ISSN":"http:\/\/id.crossref.org\/issn\/1467-5463","issn-type":"print"},{"issue":"Web Server","key":"13_22356633","doi-asserted-by":"publisher","first-page":"W379","DOI":"10.1093\/nar\/gkl045","volume":"34","author":"Friedberg","year":"2006","journal-title":"Nucleic Acids Research","ISSN":"http:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"1","key":"14_10309081","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nature genetics","ISSN":"http:\/\/id.crossref.org\/issn\/1061-4036","issn-type":"print"},{"issue":"suppl_2","key":"15_18952344","doi-asserted-by":"publisher","first-page":"W89","DOI":"10.1093\/nar\/gki414","volume":"33","author":"Laskowski","year":"2005","journal-title":"Nucleic Acids Research","ISSN":"http:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"key":"16_30506865","first-page":"89","volume":"406","author":"Boutet","year":"2007","journal-title":"Methods in molecular biology (Clifton, N.J.)","ISSN":"http:\/\/id.crossref.org\/issn\/1064-3745","issn-type":"print"},{"issue":"suppl_1","key":"17_32711242","doi-asserted-by":"publisher","first-page":"D690","DOI":"10.1093\/nar\/gkn828","volume":"37","year":"2009","journal-title":"Nucleic Acids Research","ISSN":"http:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"key":"18_29908148","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1007\/978-1-59745-515-2_5","volume":"396","author":"Mulder","year":"2007","journal-title":"Methods in molecular biology (Clifton, N.J.)","ISSN":"http:\/\/id.crossref.org\/issn\/1064-3745","issn-type":"print"},{"issue":"suppl_1","key":"19_32289019","doi-asserted-by":"publisher","first-page":"D211","DOI":"10.1093\/nar\/gkn785","volume":"37","year":"2009","journal-title":"Nucleic Acids Research","ISSN":"http:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_2","key":"20_30737391","doi-asserted-by":"publisher","first-page":"W190","DOI":"10.1093\/nar\/gkn141","volume":"36","year":"2008","journal-title":"Nucleic Acids Research","ISSN":"http:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"12","key":"21_17379501","doi-asserted-by":"publisher","first-page":"1641","DOI":"10.1093\/bioinformatics\/18.12.1641","volume":"18","author":"Gilks","year":"2002","journal-title":"Bioinformatics","ISSN":"http:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"2","key":"22_18719889","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1016\/j.mbs.2004.08.001","volume":"193","author":"Gilks","year":"2005","journal-title":"Mathematical biosciences","ISSN":"http:\/\/id.crossref.org\/issn\/0025-5564","issn-type":"print"},{"issue":"6796","key":"24_10437256","doi-asserted-by":"publisher","first-page":"593","DOI":"10.1038\/35020506","volume":"406","author":"Rea","year":"2000","journal-title":"Nature; Physical Science (London)","ISSN":"http:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"4","key":"25_16931526","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1016\/S0960-9822(02)00681-4","volume":"12","author":"Ivanov","year":"2002","journal-title":"Current biology : CB","ISSN":"http:\/\/id.crossref.org\/issn\/0960-9822","issn-type":"print"},{"issue":"3","key":"26_17563526","doi-asserted-by":"publisher","first-page":"571","DOI":"10.1016\/S1097-2765(03)00108-4","volume":"11","author":"Schleiffer","year":"2003","journal-title":"Molecular cell","ISSN":"http:\/\/id.crossref.org\/issn\/1097-2765","issn-type":"print"},{"issue":"3","key":"27_10975744","doi-asserted-by":"publisher","first-page":"741","DOI":"10.1006\/jmbi.1999.3069","volume":"292","author":"Eisenhaber","year":"1999","journal-title":"Journal of molecular biology","ISSN":"http:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"4","key":"28_17961652","doi-asserted-by":"publisher","first-page":"1691","DOI":"10.1104\/pp.103.023580","volume":"133","author":"Eisenhaber","year":"2003","journal-title":"Plant Physiology","ISSN":"http:\/\/id.crossref.org\/issn\/0032-0889","issn-type":"print"},{"issue":"2","key":"29_18074582","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1016\/j.jmb.2004.01.025","volume":"337","author":"Eisenhaber","year":"2004","journal-title":"Journal of molecular biology","ISSN":"http:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"4","key":"30_17009066","doi-asserted-by":"publisher","first-page":"541","DOI":"10.1006\/jmbi.2002.5426","volume":"317","author":"Maurer-Stroh","year":"2002","journal-title":"Journal of molecular biology","ISSN":"http:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"4","key":"31_17009065","doi-asserted-by":"publisher","first-page":"523","DOI":"10.1006\/jmbi.2002.5425","volume":"317","author":"Maurer-Stroh","year":"2002","journal-title":"Journal of molecular biology","ISSN":"http:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"6","key":"32_18926797","doi-asserted-by":"publisher","first-page":"R55","DOI":"10.1186\/gb-2005-6-6-r55","volume":"6","author":"Maurer-Stroh","year":"2005","journal-title":"Genome biology","ISSN":"http:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"issue":"3","key":"33_17594990","doi-asserted-by":"publisher","first-page":"567","DOI":"10.1016\/S0022-2836(03)00318-8","volume":"328","author":"Neuberger","year":"2003","journal-title":"Journal of molecular biology","ISSN":"http:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"3","key":"34_17594991","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1016\/S0022-2836(03)00319-X","volume":"328","author":"Neuberger","year":"2003","journal-title":"Journal of molecular biology","ISSN":"http:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"2","key":"35_28368770","doi-asserted-by":"publisher","first-page":"197","DOI":"10.2174\/138920307780363424","volume":"8","author":"Eisenhaber","year":"2007","journal-title":"Current protein &amp; peptide science","ISSN":"http:\/\/id.crossref.org\/issn\/1389-2037","issn-type":"print"},{"key":"36_21816646","doi-asserted-by":"publisher","first-page":"164","DOI":"10.1186\/1471-2105-7-164","volume":"7","author":"Schneider","year":"2006","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"http:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"10","key":"37_10583821","doi-asserted-by":"publisher","first-page":"915","DOI":"10.1093\/bioinformatics\/16.10.915","volume":"16","author":"Promponas","year":"2000","journal-title":"Bioinformatics","ISSN":"http:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"3","key":"38_15652478","doi-asserted-by":"publisher","first-page":"269","DOI":"10.1016\/0097-8485(94)85023-2","volume":"18","author":"Wootton","year":"1994","journal-title":"Computers &amp; chemistry","ISSN":"http:\/\/id.crossref.org\/issn\/0097-8485","issn-type":"print"},{"issue":"1","key":"39_17970684","doi-asserted-by":"publisher","first-page":"136","DOI":"10.1093\/bioinformatics\/btg394","volume":"20","author":"Cserzo","year":"2004","journal-title":"Bioinformatics","ISSN":"http:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"9","key":"40_11348875","doi-asserted-by":"publisher","first-page":"849","DOI":"10.1093\/bioinformatics\/17.9.849","volume":"17","author":"Tusnady","year":"2001","journal-title":"Bioinformatics","ISSN":"http:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"5","key":"41_18156813","doi-asserted-by":"publisher","first-page":"1027","DOI":"10.1016\/j.jmb.2004.03.016","volume":"338","author":"K\u00a0\u00a0ll","year":"2004","journal-title":"Journal of molecular biology","ISSN":"http:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"3","key":"42_11019819","doi-asserted-by":"publisher","first-page":"567","DOI":"10.1006\/jmbi.2000.4315","volume":"305","author":"Krogh","year":"2001","journal-title":"Journal of molecular biology","ISSN":"http:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"5009","key":"43_22502764","doi-asserted-by":"publisher","first-page":"1162","DOI":"10.1126\/science.252.5009.1162","volume":"252","author":"Lupas","year":"1991","journal-title":"Science","ISSN":"http:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"issue":"suppl_1","key":"44_29869525","doi-asserted-by":"publisher","first-page":"D245","DOI":"10.1093\/nar\/gkm977","volume":"36","year":"2008","journal-title":"Nucleic Acids Research","ISSN":"http:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"12","key":"45_6535914","doi-asserted-by":"publisher","first-page":"1000","DOI":"10.1093\/bioinformatics\/15.12.1000","volume":"15","author":"A.Schaffer","year":"1999","journal-title":"Bioinformatics","ISSN":"http:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"1","key":"46_10717429","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1101\/gr.9.1.17","volume":"9","author":"Wolf","year":"1999","journal-title":"Genome Research","ISSN":"http:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"5396","key":"47_6263656","doi-asserted-by":"publisher","first-page":"2022","DOI":"10.1126\/science.282.5396.2022","volume":"282","author":"Chervitz","year":"1998","journal-title":"Science","ISSN":"http:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"issue":"1","key":"48_11453857","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1093\/nar\/30.1.281","volume":"30","author":"Marchler-Bauer","year":"2002","journal-title":"Nucleic Acids Research","ISSN":"http:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"5","key":"49_10971892","doi-asserted-by":"crossref","first-page":"1119","DOI":"10.1212\/WNL.53.5.1119","volume":"53","author":"Matsuda","year":"1999","journal-title":"Neurology","ISSN":"http:\/\/id.crossref.org\/issn\/0028-3878","issn-type":"print"},{"issue":"4","key":"50_29526983","doi-asserted-by":"publisher","first-page":"409","DOI":"10.1016\/j.ceb.2007.07.001","volume":"19","author":"Han","year":"2007","journal-title":"Current opinion in cell biology","ISSN":"http:\/\/id.crossref.org\/issn\/0955-0674","issn-type":"print"},{"issue":"12","key":"51_16566782","doi-asserted-by":"crossref","first-page":"2375","DOI":"10.1002\/pro.5560051201","volume":"5","author":"NALEFSKI","year":"1996","journal-title":"Protein Science","ISSN":"http:\/\/id.crossref.org\/issn\/0961-8368","issn-type":"print"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/37\/suppl_2\/W435\/3905788\/gkp254.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,5,24]],"date-time":"2023-05-24T22:42:28Z","timestamp":1684968148000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkp254"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,4,23]]},"references-count":50,"journal-issue":{"issue":"Web Server","published-online":{"date-parts":[[2009,6,29]]},"published-print":{"date-parts":[[2009,7,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkp254","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,4,23]]}}}