{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,11]],"date-time":"2026-05-11T10:23:40Z","timestamp":1778495020563,"version":"3.51.4"},"reference-count":87,"publisher":"Oxford University Press (OUP)","issue":"suppl_1","license":[{"start":{"date-parts":[[2017,5,10]],"date-time":"2017-05-10T00:00:00Z","timestamp":1494374400000},"content-version":"vor","delay-in-days":2773,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,1]]},"DOI":"10.1093\/nar\/gkp818","type":"journal-article","created":{"date-parts":[[2009,10,7]],"date-time":"2009-10-07T03:59:07Z","timestamp":1254887947000},"page":"D806-D813","source":"Crossref","is-referenced-by-count":314,"title":["PMRD: plant microRNA database"],"prefix":"10.1093","volume":"38","author":[{"given":"Zhenhai","family":"Zhang","sequence":"first","affiliation":[]},{"given":"Jingyin","family":"Yu","sequence":"additional","affiliation":[]},{"given":"Daofeng","family":"Li","sequence":"additional","affiliation":[]},{"given":"Zuyong","family":"Zhang","sequence":"additional","affiliation":[]},{"given":"Fengxia","family":"Liu","sequence":"additional","affiliation":[]},{"given":"Xin","family":"Zhou","sequence":"additional","affiliation":[]},{"given":"Tao","family":"Wang","sequence":"additional","affiliation":[]},{"given":"Yi","family":"Ling","sequence":"additional","affiliation":[]},{"given":"Zhen","family":"Su","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2009,10,6]]},"reference":[{"key":"key\n\t\t\t\t20170510124715_B1","doi-asserted-by":"crossref","first-page":"281","DOI":"10.1016\/S0092-8674(04)00045-5","article-title":"MicroRNAs: genomics, biogenesis, mechanism, and function","volume":"116","author":"Bartel","year":"2004","journal-title":"Cell"},{"key":"key\n\t\t\t\t20170510124715_B2","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1146\/annurev.arplant.57.032905.105218","article-title":"MicroRNAS and their regulatory roles in plants","volume":"57","author":"Jones-Rhoades","year":"2006","journal-title":"Annu. Rev. Plant Biol."},{"key":"key\n\t\t\t\t20170510124715_B3","doi-asserted-by":"crossref","first-page":"196","DOI":"10.1016\/S1672-0229(08)60007-8","article-title":"Computational prediction of rice (Oryza sativa) miRNA targets","volume":"5","author":"Archak","year":"2007","journal-title":"Genomics Proteomics Bioinformatics"},{"key":"key\n\t\t\t\t20170510124715_B4","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1016\/j.tplants.2007.05.001","article-title":"Small RNAs as big players in plant abiotic stress responses and nutrient deprivation","volume":"12","author":"Sunkar","year":"2007","journal-title":"Trends Plant Sci."},{"key":"key\n\t\t\t\t20170510124715_B5","doi-asserted-by":"crossref","DOI":"10.1016\/j.bbagrm.2008.04.005","article-title":"Identification of cold-inducible microRNAs in plants by transcriptome analysis","volume-title":"Biochim. Biophys. Acta.","author":"Zhou","year":"2008"},{"key":"key\n\t\t\t\t20170510124715_B6","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1111\/j.1365-313X.2008.03497.x","article-title":"Stress-responsive microRNAs in Populus","volume":"55","author":"Lu","year":"2008","journal-title":"Plant J."},{"key":"key\n\t\t\t\t20170510124715_B7","doi-asserted-by":"crossref","first-page":"571","DOI":"10.1101\/gr.6897308","article-title":"Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa","volume":"18","author":"Morin","year":"2008","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170510124715_B8","doi-asserted-by":"crossref","first-page":"787","DOI":"10.1016\/j.molcel.2004.05.027","article-title":"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA","volume":"14","author":"Jones-Rhoades","year":"2004","journal-title":"Mol. Cell"},{"key":"key\n\t\t\t\t20170510124715_B9","doi-asserted-by":"crossref","first-page":"3407","DOI":"10.1101\/gad.1476406","article-title":"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana","volume":"20","author":"Rajagopalan","year":"2006","journal-title":"Genes Dev."},{"key":"key\n\t\t\t\t20170510124715_B10","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1186\/1471-2229-8-25","article-title":"Identification of novel and candidate miRNAs in rice by high throughput sequencing","volume":"8","author":"Sunkar","year":"2008","journal-title":"BMC Plant Biol."},{"key":"key\n\t\t\t\t20170510124715_B11","doi-asserted-by":"crossref","first-page":"e238","DOI":"10.1371\/journal.pcbi.0030238","article-title":"Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants","volume":"3","author":"Lindow","year":"2007","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20170510124715_B12","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1111\/j.1365-313X.2006.02697.x","article-title":"Conservation and divergence of plant microRNA genes","volume":"46","author":"Zhang","year":"2006","journal-title":"Plant J."},{"key":"key\n\t\t\t\t20170510124715_B13","doi-asserted-by":"crossref","first-page":"336","DOI":"10.1038\/sj.cr.7290302","article-title":"Identification and characterization of new plant microRNAs using EST analysis","volume":"15","author":"Zhang","year":"2005","journal-title":"Cell Res."},{"key":"key\n\t\t\t\t20170510124715_B14","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1186\/1471-2229-8-37","article-title":"In silico identification of conserved microRNAs in large number of diverse plant species","volume":"8","author":"Sunkar","year":"2008","journal-title":"BMC Plant Biol."},{"key":"key\n\t\t\t\t20170510124715_B15","doi-asserted-by":"crossref","first-page":"D140","DOI":"10.1093\/nar\/gkj112","article-title":"miRBase: microRNA sequences, targets and gene nomenclature","volume":"34","author":"Griffiths-Jones","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510124715_B16","doi-asserted-by":"crossref","first-page":"D637","DOI":"10.1093\/nar\/gki127","article-title":"ASRP: the Arabidopsis Small RNA Project Database","volume":"33","author":"Gustafson","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510124715_B17","doi-asserted-by":"crossref","first-page":"D829","DOI":"10.1093\/nar\/gkl991","article-title":"CSRDB: a small RNA integrated database and browser resource for cereals","volume":"35","author":"Johnson","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510124715_B18","doi-asserted-by":"crossref","first-page":"D136","DOI":"10.1093\/nar\/gkn766","article-title":"Rfam: updates to the RNA families database","volume":"37","author":"Gardner","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510124715_B19","doi-asserted-by":"crossref","first-page":"439","DOI":"10.1093\/nar\/gkg006","article-title":"Rfam: an RNA family database","volume":"31","author":"Griffiths-Jones","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510124715_B20","doi-asserted-by":"crossref","first-page":"P13","DOI":"10.1186\/gb-2005-6-11-p13","article-title":"Conservation and divergence of microRNA families in plants","volume":"6","author":"Dezulian","year":"2005","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170510124715_B21","doi-asserted-by":"crossref","first-page":"160","DOI":"10.1186\/1471-2164-9-160","article-title":"Novel and nodulation-regulated microRNAs in soybean roots","volume":"9","author":"Subramanian","year":"2008","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20170510124715_B22","doi-asserted-by":"crossref","first-page":"799","DOI":"10.1016\/j.bbrc.2008.11.140","article-title":"Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules","volume":"378","author":"Wang","year":"2009","journal-title":"Biochem. Biophys. Res. Commun."},{"key":"key\n\t\t\t\t20170510124715_B23","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1007\/s00425-008-0818-x","article-title":"Identification of soybean microRNAs and their targets","volume":"229","author":"Zhang","year":"2008","journal-title":"Planta"},{"key":"key\n\t\t\t\t20170510124715_B24","doi-asserted-by":"crossref","first-page":"R96","DOI":"10.1186\/gb-2007-8-6-r96","article-title":"Cloning and characterization of microRNAs from wheat (Triticum, aestivum L.,)","volume":"8","author":"Yao","year":"2007","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170510124715_B25","doi-asserted-by":"crossref","first-page":"532","DOI":"10.1007\/s10142-009-0128-9","article-title":"Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum, aestivum L.,) and Brachypodium distachyon (L.) Beauv","volume":"9","author":"Wei","year":"2009","journal-title":"Funct. Integr. Genomics."},{"key":"key\n\t\t\t\t20170510124715_B26","doi-asserted-by":"crossref","first-page":"84","DOI":"10.1038\/nature02363","article-title":"microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity","volume":"428","author":"Juarez","year":"2004","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170510124715_B27","first-page":"718","article-title":"Identifying microRNAs in plant genomes","volume":"6","author":"Maher","year":"2004","journal-title":"Proc. IEEE CSB"},{"key":"key\n\t\t\t\t20170510124715_B28","doi-asserted-by":"crossref","first-page":"916","DOI":"10.1093\/nar\/gkn998","article-title":"Characterization and expression profiles of miRNAs in rice seeds","volume":"37","author":"Xue","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510124715_B29","doi-asserted-by":"crossref","first-page":"3753","DOI":"10.1016\/j.febslet.2006.05.063","article-title":"Identification of 188 conserved maize microRNAs and their targets","volume":"580","author":"Zhang","year":"2006","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20170510124715_B30","doi-asserted-by":"crossref","first-page":"739","DOI":"10.1016\/j.plaphy.2008.05.009","article-title":"Identification of micro-RNAs in cotton","volume":"46","author":"Khan Barozai","year":"2008","journal-title":"Plant Physiol. Biochem."},{"key":"key\n\t\t\t\t20170510124715_B31","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1016\/j.gene.2007.01.034","article-title":"Computational identification of microRNAs and their targets in Gossypium hirsutum expressed sequence tags","volume":"395","author":"Qiu","year":"2007","journal-title":"Gene"},{"key":"key\n\t\t\t\t20170510124715_B32","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1016\/j.gene.2007.03.020","article-title":"Identification of cotton microRNAs and their targets","volume":"397","author":"Zhang","year":"2007","journal-title":"Gene"},{"key":"key\n\t\t\t\t20170510124715_B33","doi-asserted-by":"crossref","first-page":"1053","DOI":"10.1105\/tpc.109.065714","article-title":"Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize","volume":"21","author":"Wang","year":"2009","journal-title":"Plant Cell."},{"key":"key\n\t\t\t\t20170510124715_B34","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.gene.2008.05.023","article-title":"Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill","volume":"423","author":"Zhang","year":"2008","journal-title":"Gene"},{"key":"key\n\t\t\t\t20170510124715_B35","doi-asserted-by":"crossref","first-page":"836","DOI":"10.1261\/rna.895308","article-title":"Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana","volume":"14","author":"Liu","year":"2008","journal-title":"RNA"},{"key":"key\n\t\t\t\t20170510124715_B36","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1093\/aob\/mcn205","article-title":"Differential expression of miRNAs in response to salt stress in maize roots","volume":"103","author":"Ding","year":"2008","journal-title":"Ann. Botany"},{"key":"key\n\t\t\t\t20170510124715_B37","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1111\/j.1541-0420.2006.00670.x","article-title":"Enhanced quantile normalization of microarray data to reduce loss of information in gene expression profiles","volume":"63","author":"Hu","year":"2007","journal-title":"Biometrics"},{"key":"key\n\t\t\t\t20170510124715_B38","doi-asserted-by":"crossref","first-page":"W701","DOI":"10.1093\/nar\/gki383","article-title":"miRU: an automated plant miRNA target prediction server","volume":"33","author":"Zhang","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510124715_B39","doi-asserted-by":"crossref","first-page":"R1","DOI":"10.1186\/gb-2003-5-1-r1","article-title":"MicroRNA targets in Drosophila","volume":"5","author":"Enright","year":"2003","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170510124715_B40","first-page":"279","article-title":"From sequences to shapes and back: a case study in RNA secondary structures","volume":"255","author":"Schuster","year":"1994","journal-title":"Proceedings"},{"key":"key\n\t\t\t\t20170510124715_B41","doi-asserted-by":"crossref","first-page":"1484","DOI":"10.1016\/S0960-9822(02)01017-5","article-title":"CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana","volume":"12","author":"Park","year":"2002","journal-title":"Curr. Biol."},{"key":"key\n\t\t\t\t20170510124715_B42","doi-asserted-by":"crossref","first-page":"78","DOI":"10.1101\/gr.2908205","article-title":"Computational prediction of miRNAs in Arabidopsis thaliana","volume":"15","author":"Adai","year":"2005","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170510124715_B43","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1038\/nature01958","article-title":"Control of leaf morphogenesis by microRNAs","volume":"425","author":"Palatnik","year":"2003","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170510124715_B44","doi-asserted-by":"crossref","first-page":"2145","DOI":"10.1104\/pp.105.062943","article-title":"Expression of Arabidopsis MIRNA genes","volume":"138","author":"Xie","year":"2005","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20170510124715_B45","doi-asserted-by":"crossref","first-page":"3355","DOI":"10.1105\/tpc.106.044420","article-title":"A family of microRNAs present in plants and animals","volume":"18","author":"Arteaga-Vazquez","year":"2006","journal-title":"Plant Cell"},{"key":"key\n\t\t\t\t20170510124715_B46","doi-asserted-by":"crossref","first-page":"840","DOI":"10.1111\/j.1365-313X.2009.03904.x","article-title":"Genome-wide identification of small RNA targets based on target enrichment and microarray hybridizations","volume":"59","author":"Franco-Zorrilla","year":"2009","journal-title":"Plant J."},{"key":"key\n\t\t\t\t20170510124715_B47","doi-asserted-by":"crossref","first-page":"941","DOI":"10.1038\/nbt1417","article-title":"Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends","volume":"26","author":"German","year":"2008","journal-title":"Nat. Biotechnol."},{"key":"key\n\t\t\t\t20170510124715_B48","doi-asserted-by":"crossref","first-page":"e219","DOI":"10.1371\/journal.pone.0000219","article-title":"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes","volume":"2","author":"Fahlgren","year":"2007","journal-title":"PLoS ONE"},{"key":"key\n\t\t\t\t20170510124715_B49","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1016\/j.cell.2005.04.004","article-title":"microRNA-directed phasing during trans-acting siRNA biogenesis in plants","volume":"121","author":"Allen","year":"2005","journal-title":"Cell"},{"key":"key\n\t\t\t\t20170510124715_B50","doi-asserted-by":"crossref","first-page":"2417","DOI":"10.1105\/tpc.107.050377","article-title":"MicroRNA-mediated regulation of stomatal development in Arabidopsis","volume":"19","author":"Kutter","year":"2007","journal-title":"Plant Cell"},{"key":"key\n\t\t\t\t20170510124715_B51","doi-asserted-by":"crossref","first-page":"1276","DOI":"10.1101\/gr.5530106","article-title":"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant","volume":"16","author":"Lu","year":"2006","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170510124715_B52","doi-asserted-by":"crossref","first-page":"1616","DOI":"10.1101\/gad.1004402","article-title":"MicroRNAs in plants","volume":"16","author":"Reinhart","year":"2002","journal-title":"Genes Dev."},{"key":"key\n\t\t\t\t20170510124715_B53","doi-asserted-by":"crossref","first-page":"2001","DOI":"10.1105\/tpc.104.022830","article-title":"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis","volume":"16","author":"Sunkar","year":"2004","journal-title":"Plant Cell"},{"key":"key\n\t\t\t\t20170510124715_B54","doi-asserted-by":"crossref","first-page":"R65","DOI":"10.1186\/gb-2004-5-9-r65","article-title":"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets","volume":"5","author":"Wang","year":"2004","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170510124715_B55","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1016\/S0092-8674(02)00863-2","article-title":"Prediction of plant microRNA targets","volume":"110","author":"Rhoades","year":"2002","journal-title":"Cell"},{"key":"key\n\t\t\t\t20170510124715_B56","doi-asserted-by":"crossref","first-page":"356","DOI":"10.1038\/nature02874","article-title":"RNA silencing in plants","volume":"431","author":"Baulcombe","year":"2004","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170510124715_B57","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1104\/pp.007047","article-title":"Short RNAs can identify new candidate transposable element families in Arabidopsis","volume":"130","author":"Mette","year":"2002","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20170510124715_B58","doi-asserted-by":"crossref","first-page":"103","DOI":"10.1038\/msb4100143","article-title":"UV-B responsive microRNA genes in Arabidopsis thaliana","volume":"3","author":"Zhou","year":"2007","journal-title":"Mol. Syst. Biol."},{"key":"key\n\t\t\t\t20170510124715_B59","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1111\/j.1469-8137.2009.02915.x","article-title":"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families","volume":"184","author":"Jagadeeswaran","year":"2009","journal-title":"New Phytol."},{"key":"key\n\t\t\t\t20170510124715_B60","doi-asserted-by":"crossref","first-page":"3848","DOI":"10.1016\/j.febslet.2007.07.010","article-title":"Cloning and characterization of microRNAs from Brassica napus","volume":"581","author":"Wang","year":"2007","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20170510124715_B61","doi-asserted-by":"crossref","first-page":"1464","DOI":"10.1016\/j.febslet.2007.02.074","article-title":"Computational identification of novel microRNAs and targets in Brassica napus","volume":"581","author":"Xie","year":"2007","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20170510124715_B62","doi-asserted-by":"crossref","first-page":"2445","DOI":"10.1016\/j.febslet.2008.06.011","article-title":"Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica","volume":"582","author":"He","year":"2008","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20170510124715_B63","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1016\/j.plantsci.2007.09.013","article-title":"Differentially expressed and new non-protein-coding genes from a Carica papaya root transcriptome survey","volume":"174","author":"Porter","year":"2008","journal-title":"Plant Sci."},{"key":"key\n\t\t\t\t20170510124715_B64","doi-asserted-by":"crossref","first-page":"1190","DOI":"10.1101\/gad.1543507","article-title":"A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii","volume":"21","author":"Zhao","year":"2007","journal-title":"Genes Dev."},{"key":"key\n\t\t\t\t20170510124715_B65","doi-asserted-by":"crossref","first-page":"1126","DOI":"10.1038\/nature05903","article-title":"miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii","volume":"447","author":"Molnar","year":"2007","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170510124715_B66","doi-asserted-by":"crossref","first-page":"6714","DOI":"10.1093\/nar\/gkm707","article-title":"The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway","volume":"35","author":"Hinas","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510124715_B67","doi-asserted-by":"crossref","first-page":"538","DOI":"10.1016\/j.bbrc.2008.07.083","article-title":"Bioinformatic identification and expression analysis of new microRNAs from Medicago truncatula","volume":"374","author":"Zhou","year":"2008","journal-title":"Biochem. Biophys. Res. Commun."},{"key":"key\n\t\t\t\t20170510124715_B68","doi-asserted-by":"crossref","first-page":"593","DOI":"10.1186\/1471-2164-9-593","article-title":"High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families","volume":"9","author":"Szittya","year":"2008","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20170510124715_B69","doi-asserted-by":"crossref","first-page":"631","DOI":"10.1038\/sj.cr.7290333","article-title":"Molecular evolution of the rice miR395 gene family","volume":"15","author":"Guddeti","year":"2005","journal-title":"Cell Res."},{"key":"key\n\t\t\t\t20170510124715_B70","doi-asserted-by":"crossref","first-page":"837","DOI":"10.1111\/j.1365-313X.2005.02499.x","article-title":"Cloning and characterization of micro-RNAs from moss","volume":"43","author":"Arazi","year":"2005","journal-title":"Plant J."},{"key":"key\n\t\t\t\t20170510124715_B71","doi-asserted-by":"crossref","first-page":"1397","DOI":"10.1105\/tpc.105.031682","article-title":"Cloning and characterization of microRNAs from rice","volume":"17","author":"Sunkar","year":"2005","journal-title":"Plant Cell"},{"key":"key\n\t\t\t\t20170510124715_B72","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1093\/abbs\/37.2.75","article-title":"Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa","volume":"37","author":"Li","year":"2005","journal-title":"Acta Biochim Biophys. Sin."},{"key":"key\n\t\t\t\t20170510124715_B73","doi-asserted-by":"crossref","first-page":"1456","DOI":"10.1101\/gr.075572.107","article-title":"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains","volume":"18","author":"Zhu","year":"2008","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170510124715_B74","doi-asserted-by":"crossref","first-page":"4951","DOI":"10.1073\/pnas.0708743105","article-title":"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)","volume":"105","author":"Lu","year":"2008","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20170510124715_B75","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1186\/1471-2229-8-123","article-title":"Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice","volume":"8","author":"Lacombe","year":"2008","journal-title":"BMC Plant Biol."},{"key":"key\n\t\t\t\t20170510124715_B76","doi-asserted-by":"crossref","first-page":"296","DOI":"10.1104\/pp.105.063420","article-title":"Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice","volume":"139","author":"Liu","year":"2005","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20170510124715_B77","doi-asserted-by":"crossref","first-page":"1077","DOI":"10.1111\/j.1365-313X.2007.03208.x","article-title":"MicroRNAs in loblolly pine (Pinus, taeda L.,) and their association with fusiform rust gall development","volume":"51","author":"Lu","year":"2007","journal-title":"Plant J."},{"key":"key\n\t\t\t\t20170510124715_B78","doi-asserted-by":"crossref","first-page":"5111","DOI":"10.1016\/j.febslet.2006.08.046","article-title":"Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development","volume":"580","author":"Luo","year":"2006","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20170510124715_B79","doi-asserted-by":"crossref","first-page":"1750","DOI":"10.1105\/tpc.107.051706","article-title":"Common functions for diverse small RNAs of land plants","volume":"19","author":"Axtell","year":"2007","journal-title":"Plant Cell"},{"key":"key\n\t\t\t\t20170510124715_B80","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1186\/1471-2229-7-13","article-title":"Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution","volume":"7","author":"Fattash","year":"2007","journal-title":"BMC Plant Biol."},{"key":"key\n\t\t\t\t20170510124715_B81","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1111\/j.1365-313X.2006.02768.x","article-title":"Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss","volume":"47","author":"Talmor-Neiman","year":"2006","journal-title":"Plant J."},{"key":"key\n\t\t\t\t20170510124715_B82","doi-asserted-by":"crossref","first-page":"e1000314","DOI":"10.1371\/journal.pgen.1000314","article-title":"Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development","volume":"4","author":"Cho","year":"2008","journal-title":"PLoS Genet."},{"key":"key\n\t\t\t\t20170510124715_B83","doi-asserted-by":"crossref","first-page":"1596","DOI":"10.1126\/science.1128691","article-title":"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)","volume":"313","author":"Tuskan","year":"2006","journal-title":"Science (New York, NY)"},{"key":"key\n\t\t\t\t20170510124715_B84","doi-asserted-by":"crossref","first-page":"2186","DOI":"10.1105\/tpc.105.033456","article-title":"Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis","volume":"17","author":"Lu","year":"2005","journal-title":"Plant Cell"},{"key":"key\n\t\t\t\t20170510124715_B85","doi-asserted-by":"crossref","first-page":"1602","DOI":"10.1101\/gr.080127.108","article-title":"Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening","volume":"18","author":"Moxon","year":"2008","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170510124715_B86","doi-asserted-by":"crossref","first-page":"e13","DOI":"10.1371\/journal.pbio.0030013","article-title":"Sorghum genome sequencing by methylation filtration","volume":"3","author":"Bedell","year":"2005","journal-title":"PLoS Biol."},{"key":"key\n\t\t\t\t20170510124715_B87","doi-asserted-by":"crossref","first-page":"463","DOI":"10.1038\/nature06148","article-title":"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla","volume":"449","author":"Jaillon","year":"2007","journal-title":"Nature"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/38\/suppl_1\/D806\/16771552\/gkp818.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:41:05Z","timestamp":1522680065000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkp818"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,10,6]]},"references-count":87,"journal-issue":{"issue":"suppl_1","published-online":{"date-parts":[[2009,10,6]]},"published-print":{"date-parts":[[2010,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkp818","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,10,6]]}}}