{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,6]],"date-time":"2026-02-06T15:53:51Z","timestamp":1770393231280,"version":"3.49.0"},"reference-count":24,"publisher":"Oxford University Press (OUP)","issue":"suppl_1","license":[{"start":{"date-parts":[[2017,5,10]],"date-time":"2017-05-10T00:00:00Z","timestamp":1494374400000},"content-version":"vor","delay-in-days":2749,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,1]]},"DOI":"10.1093\/nar\/gkp902","type":"journal-article","created":{"date-parts":[[2009,10,31]],"date-time":"2009-10-31T00:46:24Z","timestamp":1256949984000},"page":"D75-D80","source":"Crossref","is-referenced-by-count":255,"title":["UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs"],"prefix":"10.1093","volume":"38","author":[{"given":"Giorgio","family":"Grillo","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Antonio","family":"Turi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Flavio","family":"Licciulli","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Flavio","family":"Mignone","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sabino","family":"Liuni","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sandro","family":"Banfi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vincenzo Alessandro","family":"Gennarino","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David S.","family":"Horner","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Giulio","family":"Pavesi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ernesto","family":"Picardi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Graziano","family":"Pesole","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2009,10,30]]},"reference":[{"key":"key\n\t\t\t\t20170510154118_B1","doi-asserted-by":"crossref","DOI":"10.1186\/gb-2002-3-3-reviews0004","article-title":"Untranslated regions of mRNAs","volume":"3","author":"Mignone","year":"2002","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170510154118_B2","doi-asserted-by":"crossref","first-page":"831","DOI":"10.1038\/nrg2455","article-title":"Biological principles of microRNA-mediated regulation: shared themes amid diversity","volume":"9","author":"Flynt","year":"2008","journal-title":"Nat. Rev. Genet."},{"key":"key\n\t\t\t\t20170510154118_B3","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1038\/nrm2085","article-title":"Illuminating the silence: understanding the structure and function of small RNAs","volume":"8","author":"Rana","year":"2007","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"key\n\t\t\t\t20170510154118_B4","doi-asserted-by":"crossref","first-page":"637","DOI":"10.1038\/nrm2738","article-title":"Regulatory roles of natural antisense transcripts","volume":"10","author":"Faghihi","year":"2009","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"key\n\t\t\t\t20170510154118_B5","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1002\/bies.20692","article-title":"Alternative splicing: current perspectives","volume":"30","author":"Kim","year":"2008","journal-title":"Bioessays"},{"key":"key\n\t\t\t\t20170510154118_B6","doi-asserted-by":"crossref","first-page":"D32","DOI":"10.1093\/nar\/gkn721","article-title":"NCBI reference sequences: current status, policy and new initiatives","volume":"37","author":"Pruitt","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510154118_B7","doi-asserted-by":"crossref","first-page":"1300","DOI":"10.1093\/bioinformatics\/btn113","article-title":"ASPicDB: a database resource for alternative splicing analysis","volume":"24","author":"Castrignano","year":"2008","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170510154118_B8","doi-asserted-by":"crossref","first-page":"D26","DOI":"10.1093\/nar\/gkl993","article-title":"Entrez gene: gene-centered information at NCBI","volume":"35","author":"Maglott","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510154118_B9","doi-asserted-by":"crossref","first-page":"D755","DOI":"10.1093\/nar\/gkn875","article-title":"The UCSC Genome Browser Database: update 2009","volume":"37","author":"Kuhn","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510154118_B10","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology. The Gene Ontology Consortium","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t20170510154118_B11","doi-asserted-by":"crossref","first-page":"D793","DOI":"10.1093\/nar\/gkn665","article-title":"McKusick's Online Mendelian Inheritance in Man (OMIM)","volume":"37","author":"Amberger","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510154118_B12","doi-asserted-by":"crossref","first-page":"D5","DOI":"10.1093\/nar\/gkn741","article-title":"Database resources of the National Center for Biotechnology Information","volume":"37","author":"Sayers","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510154118_B13","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1089\/cmb.2008.0028","article-title":"Detecting alternative gene structures from spliced ESTs: a computational approach","volume":"16","author":"Bonizzoni","year":"2009","journal-title":"J. Comput. Biol."},{"key":"key\n\t\t\t\t20170510154118_B14","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1093\/nar\/30.1.335","article-title":"UTRdb and UTRsite: specialized databases of sequences and functional elements of 5\u2032 and 3\u2032 untranslated regions of eukaryotic mRNAs. Update 2002","volume":"30","author":"Pesole","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510154118_B15","doi-asserted-by":"crossref","first-page":"D141","DOI":"10.1093\/nar\/gki021","article-title":"UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs","volume":"33","author":"Mignone","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510154118_B16","doi-asserted-by":"crossref","first-page":"D105","DOI":"10.1093\/nar\/gkn851","article-title":"miRecords: an integrated resource for microRNA-target interactions","volume":"37","author":"Xiao","year":"2009","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170510154118_B17","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1101\/gr.084129.108","article-title":"MicroRNA target prediction by expression analysis of host genes","volume":"19","author":"Gennarino","year":"2009","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170510154118_B18","doi-asserted-by":"crossref","first-page":"1034","DOI":"10.1101\/gr.3715005","article-title":"Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes","volume":"15","author":"Siepel","year":"2005","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170510154118_B19","doi-asserted-by":"crossref","first-page":"e33","DOI":"10.1371\/journal.pcbi.0020033","article-title":"Identification and classification of conserved RNA secondary structures in the human genome","volume":"2","author":"Pedersen","year":"2006","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20170510154118_B20","doi-asserted-by":"crossref","first-page":"1383","DOI":"10.1038\/nbt1144","article-title":"Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome","volume":"23","author":"Washietl","year":"2005","journal-title":"Nat. Biotechnol."},{"key":"key\n\t\t\t\t20170510154118_B21","doi-asserted-by":"crossref","first-page":"1051","DOI":"10.1101\/gr.3642605","article-title":"Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences","volume":"15","author":"King","year":"2005","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170510154118_B22","doi-asserted-by":"crossref","first-page":"R39","DOI":"10.1186\/gb-2009-10-4-r39","article-title":"FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions","volume":"10","author":"Severin","year":"2009","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170510154118_B23","doi-asserted-by":"crossref","first-page":"3608","DOI":"10.1093\/nar\/gkg548","article-title":"PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences","volume":"31","author":"Grillo","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510154118_B24","doi-asserted-by":"crossref","first-page":"D136","DOI":"10.1093\/nar\/gkn766","article-title":"Rfam: updates to the RNA families database","volume":"37","author":"Gardner","year":"2009","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/38\/suppl_1\/D75\/16771988\/gkp902.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:41:08Z","timestamp":1522680068000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkp902"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,10,30]]},"references-count":24,"journal-issue":{"issue":"suppl_1","published-online":{"date-parts":[[2009,10,30]]},"published-print":{"date-parts":[[2010,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkp902","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,10,30]]}}}