{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,11]],"date-time":"2026-03-11T23:28:06Z","timestamp":1773271686293,"version":"3.50.1"},"reference-count":15,"publisher":"Oxford University Press (OUP)","issue":"2","license":[{"start":{"date-parts":[[2016,11,7]],"date-time":"2016-11-07T00:00:00Z","timestamp":1478476800000},"content-version":"vor","delay-in-days":2191,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.5"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,1]]},"DOI":"10.1093\/nar\/gkq1015","type":"journal-article","created":{"date-parts":[[2010,11,9]],"date-time":"2010-11-09T05:49:12Z","timestamp":1289281752000},"page":"e9-e9","source":"Crossref","is-referenced-by-count":94,"title":["Accurate quantification of transcriptome from RNA-Seq data by effective length normalization"],"prefix":"10.1093","volume":"39","author":[{"given":"Soohyun","family":"Lee","sequence":"first","affiliation":[]},{"given":"Chae Hwa","family":"Seo","sequence":"additional","affiliation":[]},{"given":"Byungho","family":"Lim","sequence":"additional","affiliation":[]},{"given":"Jin Ok","family":"Yang","sequence":"additional","affiliation":[]},{"given":"Jeongsu","family":"Oh","sequence":"additional","affiliation":[]},{"given":"Minjin","family":"Kim","sequence":"additional","affiliation":[]},{"given":"Sooncheol","family":"Lee","sequence":"additional","affiliation":[]},{"given":"Byungwook","family":"Lee","sequence":"additional","affiliation":[]},{"given":"Changwon","family":"Kang","sequence":"additional","affiliation":[]},{"given":"Sanghyuk","family":"Lee","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2010,11,8]]},"reference":[{"key":"key\n\t\t\t\t20170510161456_B1","doi-asserted-by":"crossref","first-page":"956","DOI":"10.1126\/science.1160342","article-title":"A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome","volume":"321","author":"Sultan","year":"2008","journal-title":"Science"},{"key":"key\n\t\t\t\t20170510161456_B2","doi-asserted-by":"crossref","first-page":"1344","DOI":"10.1126\/science.1158441","article-title":"The transcriptional landscape of the yeast genome defined by RNA sequencing","volume":"320","author":"Nagalakshmi","year":"2008","journal-title":"Science"},{"key":"key\n\t\t\t\t20170510161456_B3","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1038\/nmeth.1226","article-title":"Mapping and quantifying mammalian transcriptomes by RNA-Seq","volume":"5","author":"Mortazavi","year":"2008","journal-title":"Nat. Methods"},{"key":"key\n\t\t\t\t20170510161456_B4","doi-asserted-by":"crossref","first-page":"e1000598","DOI":"10.1371\/journal.pcbi.1000598","article-title":"An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data","volume":"5","author":"Ramskold","year":"2009","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20170510161456_B5","doi-asserted-by":"crossref","first-page":"470","DOI":"10.1038\/nature07509","article-title":"Alternative isoform regulation in human tissue transcriptomes","volume":"456","author":"Wang","year":"2008","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170510161456_B6","doi-asserted-by":"crossref","first-page":"511","DOI":"10.1038\/nbt.1621","article-title":"Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation","volume":"28","author":"Trapnell","year":"2010","journal-title":"Nat. Biotechnol."},{"key":"key\n\t\t\t\t20170510161456_B7","doi-asserted-by":"crossref","first-page":"1509","DOI":"10.1101\/gr.079558.108","article-title":"RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays","volume":"18","author":"Marioni","year":"2008","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170510161456_B8","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1038\/nrg2484","article-title":"RNA-Seq: a revolutionary tool for transcriptomics","volume":"10","author":"Wang","year":"2009","journal-title":"Nat. Rev. Genet."},{"key":"key\n\t\t\t\t20170510161456_B9","doi-asserted-by":"crossref","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","article-title":"Ultrafast and memory-efficient alignment of short DNA sequences to the human genome","volume":"10","author":"Langmead","year":"2009","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170510161456_B10","doi-asserted-by":"crossref","first-page":"1105","DOI":"10.1093\/bioinformatics\/btp120","article-title":"TopHat: discovering splice junctions with RNA-Seq","volume":"25","author":"Trapnell","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170510161456_B11","doi-asserted-by":"crossref","first-page":"1026","DOI":"10.1093\/bioinformatics\/btp113","article-title":"Statistical inferences for isoform expression in RNA-Seq","volume":"25","author":"Jiang","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170510161456_B12","doi-asserted-by":"crossref","first-page":"S6","DOI":"10.1186\/1471-2105-11-S3-S6","article-title":"Towards reliable isoform quantification using RNA-SEQ data","volume":"11","author":"Howard","year":"2010","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170510161456_B13","doi-asserted-by":"crossref","first-page":"P5","DOI":"10.1186\/1471-2105-10-S13-P5","article-title":"Transcript quantification with RNA-Seq data","volume":"10","author":"Bohnert","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170510161456_B14","doi-asserted-by":"crossref","first-page":"e170","DOI":"10.1093\/nar\/gkq670","article-title":"A two-parameter generalized Poisson model to improve the analysis of RNA-seq data","volume":"38","author":"Srivastava","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170510161456_B15","doi-asserted-by":"crossref","first-page":"e112","DOI":"10.1093\/nar\/gkq041","article-title":"Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments","volume":"38","author":"Richard","year":"2010","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/39\/2\/e9\/16776235\/gkq1015.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:41:15Z","timestamp":1522680075000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkq1015"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,11,8]]},"references-count":15,"journal-issue":{"issue":"2","published-online":{"date-parts":[[2010,11,8]]},"published-print":{"date-parts":[[2011,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkq1015","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published":{"date-parts":[[2010,11,8]]}}}