{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,12]],"date-time":"2026-04-12T08:24:45Z","timestamp":1775982285992,"version":"3.50.1"},"reference-count":22,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2017,5,12]],"date-time":"2017-05-12T00:00:00Z","timestamp":1494547200000},"content-version":"vor","delay-in-days":2003,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,1]]},"DOI":"10.1093\/nar\/gkr1023","type":"journal-article","created":{"date-parts":[[2011,11,19]],"date-time":"2011-11-19T02:02:02Z","timestamp":1321668122000},"page":"D761-D769","source":"Crossref","is-referenced-by-count":81,"title":["UniPathway: a resource for the exploration and annotation of metabolic pathways"],"prefix":"10.1093","volume":"40","author":[{"given":"Anne","family":"Morgat","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eric","family":"Coissac","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elisabeth","family":"Coudert","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kristian B.","family":"Axelsen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Guillaume","family":"Keller","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Amos","family":"Bairoch","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alan","family":"Bridge","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lydie","family":"Bougueleret","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ioannis","family":"Xenarios","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alain","family":"Viari","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2011,11,17]]},"reference":[{"key":"key\n\t\t\t\t20170512150138_gkr1023-B1","doi-asserted-by":"crossref","first-page":"3687","DOI":"10.1093\/nar\/gkl438","article-title":"The outcomes of pathway database computations depend on pathway ontology","volume":"34","author":"Green","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B2","doi-asserted-by":"crossref","first-page":"D355","DOI":"10.1093\/nar\/gkp896","article-title":"KEGG for representation and analysis of molecular networks involving diseases and drugs","volume":"38","author":"Kanehisa","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B3","doi-asserted-by":"crossref","first-page":"D473","DOI":"10.1093\/nar\/gkp875","article-title":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway\/genome databases","volume":"38","author":"Caspi","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B4","doi-asserted-by":"crossref","first-page":"5691","DOI":"10.1093\/nar\/gki866","article-title":"The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes","volume":"33","author":"Overbeek","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B5","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1186\/1471-2105-8-139","article-title":"Toward the automated generation of genome-scale metabolic networks in the SEED","volume":"8","author":"DeJongh","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B6","doi-asserted-by":"crossref","first-page":"977","DOI":"10.1038\/nbt.1672","article-title":"High throughput generation, optimization and analysis of genome-scale metabolic models","volume":"9","author":"Henry","year":"2010","journal-title":"Nat. Biotech."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B7","doi-asserted-by":"crossref","first-page":"1054","DOI":"10.1039\/c0np00047g","article-title":"Convergent strategies in biosynthesis","volume":"28","author":"Dairi","year":"2011","journal-title":"Nat. Prod. Rep."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B8","doi-asserted-by":"crossref","first-page":"3256","DOI":"10.1128\/JB.01381-07","article-title":"Biochemical and phylogenetic characterization of a novel diaminopimelate biosynthesis pathway in prokaryotes identifies a diverged form of LL-diaminopimelate aminotransferase","volume":"190","author":"Hudson","year":"2008","journal-title":"J. Bacteriol."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B9","first-page":"361","article-title":"Lysine is synthesized through the alpha-aminoadipate pathway in Thermus thermophilus","volume":"169","author":"Kosuge","year":"1998","journal-title":"FEMS Microbiol. Lett."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B10","doi-asserted-by":"crossref","first-page":"673","DOI":"10.1038\/nchembio.198","article-title":"Discovery of proteinaceous N-modification in lysine biosynthesis of Thermus thermophilus","volume":"5","author":"Horie","year":"2009","journal-title":"Nat. Chem. Biol."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B11","doi-asserted-by":"crossref","first-page":"32","DOI":"10.1093\/nar\/24.1.32","article-title":"EcoCyc: an encyclopedia of Escherichia coli genes and metabolis","volume":"24","author":"Karp","year":"1996","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B12","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1016\/j.biosystems.2004.12.003","article-title":"UML as a cell and biochemistry modeling language","volume":"80","author":"Webb","year":"2005","journal-title":"Biosystems"},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B13","doi-asserted-by":"crossref","first-page":"D214","DOI":"10.1093\/nar\/gkq1020","article-title":"Ongoing and future developments at the Universal Protein Resource","volume":"39","author":"The UniProt Consortium","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B14","doi-asserted-by":"crossref","first-page":"D331","DOI":"10.1093\/nar\/gkp1018","article-title":"The Gene Ontology in 2010: extensions and refinements","volume":"38","author":"Gene Ontology Consortium","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B15","doi-asserted-by":"crossref","first-page":"D224","DOI":"10.1093\/nar\/gkn785","article-title":"InterPro: the integrative protein signature database","volume":"37","author":"Hunter","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B16","doi-asserted-by":"crossref","first-page":"D161","DOI":"10.1093\/nar\/gkp885","article-title":"PROSITE, a protein domain database for functional characterization and annotation","volume":"38","author":"Sigrist","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B17","doi-asserted-by":"crossref","first-page":"D471","DOI":"10.1093\/nar\/gkn661","article-title":"HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB\/Swiss-Prot","volume":"37","author":"Lima","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B18","doi-asserted-by":"crossref","first-page":"D211","DOI":"10.1093\/nar\/gkp985","article-title":"The Pfam protein families database","volume":"38","author":"Finn","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B19","doi-asserted-by":"crossref","first-page":"6633","DOI":"10.1093\/nar\/gkg847","article-title":"Enzyme-specific profiles for genome annotation: PRIAM","volume":"31","author":"Claudel-Renard","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B20","doi-asserted-by":"crossref","first-page":"D297","DOI":"10.1093\/nar\/gki039","article-title":"Integr8 and genome reviews: integrated views of complete genomes and proteomes","volume":"33","author":"Kersey","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B21","doi-asserted-by":"crossref","first-page":"D5","DOI":"10.1093\/nar\/gkn741","article-title":"Database resources of the National Center for Biotechnology Information","volume":"37","author":"Sayers","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512150138_gkr1023-B22","doi-asserted-by":"crossref","first-page":"D249","DOI":"10.1093\/nar\/gkp886","article-title":"Chemical entities of biological interest: an update","volume":"38","author":"de Matos","year":"2010","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:42:00Z","timestamp":1522680120000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkr1023"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,11,17]]},"references-count":22,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2011,11,17]]},"published-print":{"date-parts":[[2012,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkr1023","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published":{"date-parts":[[2011,11,17]]}}}