{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,16]],"date-time":"2026-03-16T12:05:25Z","timestamp":1773662725518,"version":"3.50.1"},"reference-count":33,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2017,5,12]],"date-time":"2017-05-12T00:00:00Z","timestamp":1494547200000},"content-version":"vor","delay-in-days":1995,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Nucleic Acids Research"],"published-print":{"date-parts":[[2012,1,1]]},"DOI":"10.1093\/nar\/gkr1027","type":"journal-article","created":{"date-parts":[[2011,11,27]],"date-time":"2011-11-27T01:14:28Z","timestamp":1322356468000},"page":"D313-D320","source":"Crossref","is-referenced-by-count":39,"title":["ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree"],"prefix":"10.1093","volume":"40","author":[{"given":"N.","family":"Rappoport","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.","family":"Karsenty","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"A.","family":"Stern","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"N.","family":"Linial","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M.","family":"Linial","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2011,11,25]]},"reference":[{"issue":"1","key":"1_17466558","doi-asserted-by":"publisher","first-page":"348","DOI":"10.1093\/nar\/gkg096","volume":"31","author":"Sasson","year":"2003","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"key":"2_41311204","first-page":"D142","volume":"38","year":"2011","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"2","key":"3_34112508","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1186\/gb-2009-10-2-207","volume":"10","author":"Loewenstein","year":"2009","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"issue":"3","key":"4_10803537","doi-asserted-by":"publisher","first-page":"228","DOI":"10.1093\/bioinformatics\/15.3.228","volume":"15","author":"Fleischmann","year":"1999","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"3","key":"5_21578846","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1093\/bib\/bbl004","volume":"7","year":"2006","journal-title":"Briefings in Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1467-5463","issn-type":"print"},{"issue":"8","key":"6_29274341","doi-asserted-by":"publisher","first-page":"e160","DOI":"10.1371\/journal.pcbi.0030160","volume":"3","author":"Brown","year":"2007","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"issue":"5","key":"7_27956081","doi-asserted-by":"publisher","first-page":"1511","DOI":"10.1016\/j.jmb.2007.01.063","volume":"367","author":"Watson","year":"2007","journal-title":"Journal of molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"41","key":"8_19687636","doi-asserted-by":"publisher","first-page":"14754","DOI":"10.1073\/pnas.0404569101","volume":"101","year":"2004","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"suppl_1","key":"9_35997997","doi-asserted-by":"publisher","first-page":"D211","DOI":"10.1093\/nar\/gkp985","volume":"38","year":"2010","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"10_32444912","doi-asserted-by":"publisher","first-page":"D229","DOI":"10.1093\/nar\/gkn808","volume":"37","year":"2009","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"11_22972847","doi-asserted-by":"publisher","first-page":"D241","DOI":"10.1093\/nar\/gkl850","volume":"35","year":"2007","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"12_36192347","doi-asserted-by":"publisher","first-page":"D204","DOI":"10.1093\/nar\/gkp1019","volume":"38","year":"2010","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_2","key":"13_40069206","doi-asserted-by":"publisher","first-page":"W546","DOI":"10.1093\/nar\/gkr438","volume":"39","year":"2011","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"14_35843313","doi-asserted-by":"publisher","first-page":"D161","DOI":"10.1093\/nar\/gkp885","volume":"38","year":"2010","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"1","key":"15_17466571","doi-asserted-by":"publisher","first-page":"400","DOI":"10.1093\/nar\/gkg030","volume":"31","author":"Attwood","year":"2003","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"16_18802063","doi-asserted-by":"publisher","first-page":"D212","DOI":"10.1093\/nar\/gki034","volume":"33","author":"Bru","year":"2005","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"1","key":"17_6399239","doi-asserted-by":"publisher","first-page":"228","DOI":"10.1093\/nar\/28.1.228","volume":"28","author":"Henikoff","year":"2000","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"90001","key":"18_18655190","doi-asserted-by":"publisher","first-page":"D112","DOI":"10.1093\/nar\/gkh097","volume":"32","author":"Wu","year":"2004","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"key":"19_40859284","first-page":"D225","volume":"39","year":"2010","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"20_32289019","doi-asserted-by":"publisher","first-page":"D211","DOI":"10.1093\/nar\/gkn785","volume":"37","year":"2009","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"21_29861331","doi-asserted-by":"publisher","first-page":"D419","DOI":"10.1093\/nar\/gkm993","volume":"36","year":"2008","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"22_32556663","doi-asserted-by":"publisher","first-page":"D310","DOI":"10.1093\/nar\/gkn877","volume":"37","year":"2009","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"23_18802072","doi-asserted-by":"publisher","first-page":"D247","DOI":"10.1093\/nar\/gki024","volume":"33","author":"Pearl","year":"2005","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"24_32390415","doi-asserted-by":"publisher","first-page":"D396","DOI":"10.1093\/nar\/gkn803","volume":"37","year":"2009","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"10","key":"25_27960295","doi-asserted-by":"publisher","first-page":"1282","DOI":"10.1093\/bioinformatics\/btm098","volume":"23","year":"2007","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"suppl_1","key":"26_18802064","doi-asserted-by":"publisher","first-page":"D216","DOI":"10.1093\/nar\/gki007","volume":"33","author":"Kaplan","year":"2005","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"6","key":"27_22012437","doi-asserted-by":"publisher","first-page":"1557","DOI":"10.1110\/ps.062185706","volume":"15","year":"2006","journal-title":"Protein Science","ISSN":"https:\/\/id.crossref.org\/issn\/0961-8368","issn-type":"print"},{"issue":"17","key":"28_37723758","doi-asserted-by":"publisher","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","volume":"25","year":"1997","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"13","key":"29_31321771","doi-asserted-by":"publisher","first-page":"i41","DOI":"10.1093\/bioinformatics\/btn174","volume":"24","year":"2008","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"18","key":"30_19383045","doi-asserted-by":"publisher","first-page":"3604","DOI":"10.1093\/bioinformatics\/bti542","volume":"21","year":"2005","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"1","key":"31_6399261","doi-asserted-by":"publisher","first-page":"304","DOI":"10.1093\/nar\/28.1.304","volume":"28","author":"Bairoch","year":"2000","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_2","key":"32_37215237","doi-asserted-by":"publisher","first-page":"W84","DOI":"10.1093\/nar\/gkq320","volume":"38","year":"2010","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"3","key":"33_27939021","doi-asserted-by":"publisher","first-page":"e16","DOI":"10.1371\/journal.pbio.0050016","volume":"5","author":"Yooseph","year":"2007","journal-title":"PLoS biology","ISSN":"https:\/\/id.crossref.org\/issn\/1544-9173","issn-type":"print"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:42:00Z","timestamp":1522680120000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkr1027"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,11,25]]},"references-count":33,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2011,12,22]]},"published-print":{"date-parts":[[2012,1,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkr1027","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,11,25]]}}}