{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,16]],"date-time":"2026-07-16T02:57:49Z","timestamp":1784170669939,"version":"3.55.0"},"reference-count":23,"publisher":"Oxford University Press (OUP)","issue":"suppl_2","license":[{"start":{"date-parts":[[2016,11,14]],"date-time":"2016-11-14T00:00:00Z","timestamp":1479081600000},"content-version":"vor","delay-in-days":2011,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,7,1]]},"DOI":"10.1093\/nar\/gkr365","type":"journal-article","created":{"date-parts":[[2011,5,17]],"date-time":"2011-05-17T00:20:10Z","timestamp":1305591610000},"page":"W288-W292","source":"Crossref","is-referenced-by-count":64,"title":["MetalDetector v2.0: predicting the geometry of metal binding sites from protein sequence"],"prefix":"10.1093","volume":"39","author":[{"given":"Andrea","family":"Passerini","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marco","family":"Lippi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Paolo","family":"Frasconi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2011,5,14]]},"reference":[{"key":"key\n\t\t\t\t20170720163054_B1","doi-asserted-by":"crossref","DOI":"10.1201\/9781482270822","volume-title":"Handbook on Metalloproteins","author":"Bertini","year":"2001","edition":"1st edn"},{"key":"key\n\t\t\t\t20170720163054_B2","doi-asserted-by":"crossref","first-page":"851","DOI":"10.1093\/bioinformatics\/16.10.851","article-title":"Bioinorganic motifs: towards functional classification of metalloproteins","volume":"16","author":"Degtyarenko","year":"2000","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170720163054_B3","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1016\/S0022-2836(02)01036-7","article-title":"Analysis of catalytic residues in enzyme active sites","volume":"324","author":"Bartlett","year":"2002","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20170720163054_B4","doi-asserted-by":"crossref","first-page":"443","DOI":"10.1016\/j.cbpc.2007.07.010","article-title":"Zinc, antioxidant systems and metallothionein in metal mediated-apoptosis: biochemical and cytochemical aspects","volume":"146","author":"Formigari","year":"2007","journal-title":"Comp. Biochem. Physiol. C Toxicol. Pharmacol."},{"key":"key\n\t\t\t\t20170720163054_B5","doi-asserted-by":"crossref","first-page":"351","DOI":"10.1089\/rej.2006.9.351","article-title":"Zinc homeostasis in aging: two elusive faces of the same \u201cmetal\u201d","volume":"9","author":"Mocchegiani","year":"2006","journal-title":"Rejuvenation Res."},{"key":"key\n\t\t\t\t20170720163054_B6","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1034\/j.1399-5618.2002.40201.x","article-title":"Glycogen synthase kinase-3beta, mood stabilizers, and neuroprotection","volume":"4","author":"Li","year":"2002","journal-title":"Bipolar Disord."},{"key":"key\n\t\t\t\t20170720163054_B7","doi-asserted-by":"crossref","first-page":"3040","DOI":"10.1007\/s00018-008-8189-9","article-title":"Metallomics and metalloproteomics","volume":"65","author":"Chance","year":"2008","journal-title":"Cell Mol. Life Sci."},{"key":"key\n\t\t\t\t20170720163054_B8","doi-asserted-by":"crossref","DOI":"10.1101\/gr.115097.110","article-title":"Characterization of metalloproteins by high-throughput x-ray absorption spectroscopy","author":"Shi","year":"2011","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170720163054_B9","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1039\/B912156K","article-title":"Bioinformatics in bioinorganic chemistry","volume":"2","author":"Bertini","year":"2010","journal-title":"Metallomics"},{"key":"key\n\t\t\t\t20170720163054_B10","doi-asserted-by":"crossref","first-page":"W182","DOI":"10.1093\/nar\/gkl189","article-title":"DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification","volume":"34","author":"Ferr\u00e8","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163054_B11","doi-asserted-by":"crossref","first-page":"305","DOI":"10.1002\/prot.21135","article-title":"Identifying cysteines and histidines in transition-metal-binding sites using support vector machines and neural networks","volume":"65","author":"Passerini","year":"2006","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20170720163054_B12","doi-asserted-by":"crossref","first-page":"775","DOI":"10.1093\/bioinformatics\/btm618","article-title":"Prediction of zinc-binding sites in proteins from sequence","volume":"24","author":"Shu","year":"2008","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170720163054_B13","doi-asserted-by":"crossref","first-page":"2094","DOI":"10.1093\/bioinformatics\/btn371","article-title":"MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence","volume":"24","author":"Lippi","year":"2008","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170720163054_B14","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1016\/j.jmb.2004.07.019","article-title":"Predicting metal-binding site residues in low-resolution structural models","volume":"342","author":"Sodhi","year":"2004","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20170720163054_B15","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1002\/prot.22913","article-title":"Findsite-metal: integrating evolutionary information and machine learning for structure-based metal-binding site prediction at the proteome level","volume":"79","author":"Brylinski","year":"2011","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20170720163054_B16","doi-asserted-by":"crossref","first-page":"54","DOI":"10.1110\/ps.073138508","article-title":"Robust recognition of zinc binding sites in proteins","volume":"17","author":"Ebert","year":"2008","journal-title":"Protein Sci."},{"key":"key\n\t\t\t\t20170720163054_B17","doi-asserted-by":"crossref","first-page":"365","DOI":"10.1002\/prot.22352","article-title":"Prediction of 3D metal binding sites from translated gene sequences based on remote-homology templates","volume":"76","author":"Levy","year":"2009","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20170720163054_B18","doi-asserted-by":"crossref","first-page":"208","DOI":"10.1002\/prot.21587","article-title":"Prediction of transition metal-binding sites from apo protein structures","volume":"70","author":"Babor","year":"2007","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20170720163054_B19","first-page":"465","article-title":"Predicting the geometry of metal binding sites from protein sequence","volume":"21","author":"Frasconi","year":"2009","journal-title":"Adv. Neural Inform. Proces. Syst."},{"key":"key\n\t\t\t\t20170720163054_B20","doi-asserted-by":"crossref","DOI":"10.7551\/mitpress\/7443.001.0001","volume-title":"Predicting Structured Data","author":"Bakir","year":"2007"},{"key":"key\n\t\t\t\t20170720163054_B21","doi-asserted-by":"crossref","first-page":"3789","DOI":"10.1093\/nar\/gkg620","article-title":"Uniqueprot: creating representative protein sequence sets","volume":"31","author":"Mika","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163054_B22","doi-asserted-by":"crossref","first-page":"536","DOI":"10.1016\/S0022-2836(05)80134-2","article-title":"Scop: a structural classification of proteins database for the investigation of sequences and structures","volume":"247","author":"Murzin","year":"1995","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20170720163054_B23","doi-asserted-by":"crossref","first-page":"1658","DOI":"10.1093\/bioinformatics\/btl158","article-title":"Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences","volume":"22","author":"Li","year":"2006","journal-title":"Bioinformatics"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/39\/suppl_2\/W288\/18783678\/gkr365.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,10]],"date-time":"2019-06-10T16:40:13Z","timestamp":1560184813000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkr365"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,5,14]]},"references-count":23,"journal-issue":{"issue":"suppl_2","published-online":{"date-parts":[[2011,5,14]]},"published-print":{"date-parts":[[2011,7,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkr365","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,5,14]]}}}