{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,13]],"date-time":"2026-05-13T03:26:11Z","timestamp":1778642771028,"version":"3.51.4"},"reference-count":21,"publisher":"Oxford University Press (OUP)","issue":"suppl_2","license":[{"start":{"date-parts":[[2016,11,14]],"date-time":"2016-11-14T00:00:00Z","timestamp":1479081600000},"content-version":"vor","delay-in-days":2005,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,7,1]]},"DOI":"10.1093\/nar\/gkr387","type":"journal-article","created":{"date-parts":[[2011,5,21]],"date-time":"2011-05-21T00:59:32Z","timestamp":1305939572000},"page":"W391-W399","source":"Crossref","is-referenced-by-count":45,"title":["CENTDIST: discovery of co-associated factors by motif distribution"],"prefix":"10.1093","volume":"39","author":[{"given":"Zhizhuo","family":"Zhang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cheng Wei","family":"Chang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wan Ling","family":"Goh","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wing-Kin","family":"Sung","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Edwin","family":"Cheung","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2011,5,20]]},"reference":[{"key":"key\n\t\t\t\t20170720163200_B1","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1146\/annurev-physiol-021909-135840","article-title":"Genomic analyses of hormone signaling and gene regulation","volume":"72","author":"Cheung","year":"2010","journal-title":"Ann. Rev. Physiol."},{"key":"key\n\t\t\t\t20170720163200_B2","doi-asserted-by":"crossref","first-page":"1106","DOI":"10.1016\/j.cell.2008.04.043","article-title":"Integration of external signaling pathways with the core transcriptional network in embryonic stem cells","volume":"133","author":"Chen","year":"2008","journal-title":"Cell"},{"key":"key\n\t\t\t\t20170720163200_B3","doi-asserted-by":"crossref","first-page":"1497","DOI":"10.1126\/science.1141319","article-title":"Genome-wide mapping of in vivo protein-DNA interactions","volume":"316","author":"Johnson","year":"2007","journal-title":"Science (New York, N.Y.)"},{"key":"key\n\t\t\t\t20170720163200_B4","doi-asserted-by":"crossref","first-page":"R137","DOI":"10.1186\/gb-2008-9-9-r137","article-title":"Model-based analysis of ChIP-Seq (MACS)","volume":"9","author":"Zhang","year":"2008","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170720163200_B5","doi-asserted-by":"crossref","first-page":"1199","DOI":"10.1093\/bioinformatics\/btq128","article-title":"A signal-noise model for significance analysis of ChIP-seq with negative control","volume":"26","author":"Xu","year":"2010","journal-title":"Bioinformatics (Oxford, England)"},{"key":"key\n\t\t\t\t20170720163200_B6","doi-asserted-by":"crossref","first-page":"W551","DOI":"10.1093\/nar\/gkl322","article-title":"CEAS: cis-regulatory element annotation system","volume":"34","author":"Ji","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163200_B7","doi-asserted-by":"crossref","first-page":"495","DOI":"10.1186\/1471-2105-9-495","article-title":"CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes","volume":"9","author":"Hestand","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170720163200_B8","doi-asserted-by":"crossref","first-page":"W128","DOI":"10.1093\/nar\/gkn195","article-title":"ConTra: a promoter alignment analysis tool for identification of transcription factor binding sites across species","volume":"36","author":"Hooghe","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163200_B9","doi-asserted-by":"crossref","first-page":"W245","DOI":"10.1093\/nar\/gkm427","article-title":"oPOSSUM: integrated tools for analysis of regulatory motif over-representation","volume":"35","author":"Ho Sui","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163200_B10","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1093\/bioinformatics\/16.1.16","article-title":"DNA binding sites: representation and discovery","volume":"16","author":"Stormo","year":"2000","journal-title":"Bioinformatics (Oxford, England)"},{"key":"key\n\t\t\t\t20170720163200_B11","doi-asserted-by":"crossref","first-page":"343","DOI":"10.1038\/ng.545","article-title":"Nucleosome dynamics define transcriptional enhancers","volume":"42","author":"He","year":"2010","journal-title":"Nature Genet."},{"key":"key\n\t\t\t\t20170720163200_B12","doi-asserted-by":"crossref","first-page":"4549","DOI":"10.1093\/nar\/gkn382","article-title":"Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing","volume":"36","author":"Wederell","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163200_B13","first-page":"261","article-title":"Exhaustive search for over-represented DNA sequence motifs with CisFinder","volume":"16","author":"Sharov","year":"2009","journal-title":"DNA Res. Int. J Rapid Public. Reports Gene Genome"},{"key":"key\n\t\t\t\t20170720163200_B14","doi-asserted-by":"crossref","first-page":"374","DOI":"10.1093\/nar\/gkg108","article-title":"TRANSFAC: transcriptional regulation, from patterns to profiles","volume":"31","author":"Matys","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163200_B15","doi-asserted-by":"crossref","first-page":"D91","DOI":"10.1093\/nar\/gkh012","article-title":"JASPAR: an open-access database for eukaryotic transcription factor binding profiles","volume":"32","author":"Sandelin","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163200_B16","doi-asserted-by":"crossref","first-page":"3639","DOI":"10.1073\/pnas.0911315106","article-title":"Close association of RNA polymerase II and many transcription factors with Pol III genes","volume":"107","author":"Raha","year":"2010","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20170720163200_B17","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1148\/radiology.143.1.7063747","article-title":"The meaning and use of the area under a receiver operating characteristic (ROC) curve","volume":"143","author":"Hanley","year":"1982","journal-title":"Radiology"},{"key":"key\n\t\t\t\t20170720163200_B18","doi-asserted-by":"crossref","first-page":"e3932","DOI":"10.1371\/journal.pone.0003932","article-title":"Stat3 and c-Myc genome-wide promoter occupancy in embryonic stem cells","volume":"3","author":"Kidder","year":"2008","journal-title":"PloS One"},{"key":"key\n\t\t\t\t20170720163200_B19","doi-asserted-by":"crossref","first-page":"276","DOI":"10.1210\/er.2002-0032","article-title":"Androgen receptor in prostate cancer","volume":"25","author":"Heinlein","year":"2004","journal-title":"Endocr. Rev."},{"key":"key\n\t\t\t\t20170720163200_B20","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1177\/1066896908315813","article-title":"Upregulation of activator protein-4 in human colorectal cancer with metastasis","volume":"17","author":"Cao","year":"2009","journal-title":"Int. J. Surg. Pathol."},{"key":"key\n\t\t\t\t20170720163200_B21","doi-asserted-by":"crossref","first-page":"6097","DOI":"10.1093\/nar\/18.20.6097","article-title":"Sequence logos: a new way to display consensus sequences","volume":"18","author":"Schneider","year":"1990","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/39\/suppl_2\/W391\/18783770\/gkr387.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:42:19Z","timestamp":1522680139000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkr387"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,5,20]]},"references-count":21,"journal-issue":{"issue":"suppl_2","published-online":{"date-parts":[[2011,5,20]]},"published-print":{"date-parts":[[2011,7,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkr387","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,5,20]]}}}