{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,10]],"date-time":"2026-04-10T05:34:20Z","timestamp":1775799260801,"version":"3.50.1"},"reference-count":42,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2017,5,12]],"date-time":"2017-05-12T00:00:00Z","timestamp":1494547200000},"content-version":"vor","delay-in-days":2003,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,1]]},"DOI":"10.1093\/nar\/gkr942","type":"journal-article","created":{"date-parts":[[2011,11,19]],"date-time":"2011-11-19T02:02:02Z","timestamp":1321668122000},"page":"D615-D620","source":"Crossref","is-referenced-by-count":58,"title":["DBETH: A Database of Bacterial Exotoxins for Human"],"prefix":"10.1093","volume":"40","author":[{"given":"Abhijit","family":"Chakraborty","sequence":"first","affiliation":[]},{"given":"Sudeshna","family":"Ghosh","sequence":"additional","affiliation":[]},{"given":"Garisha","family":"Chowdhary","sequence":"additional","affiliation":[]},{"given":"Ujjwal","family":"Maulik","sequence":"additional","affiliation":[]},{"given":"Saikat","family":"Chakrabarti","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2011,11,17]]},"reference":[{"key":"key\n\t\t\t\t20170512133404_gkr942-B1","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1038\/nrmicro1150","article-title":"Bacterial cytotoxins: targeting eukaryotic switches","volume":"3","author":"Aktories","year":"2005","journal-title":"Nat. Rev. Microbiol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B2","doi-asserted-by":"crossref","first-page":"530","DOI":"10.1038\/35080089","article-title":"The bacterial toxin toolkit","volume":"2","author":"Schiavo","year":"2001","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B3","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1038\/nrmicro2602","article-title":"Manipulation of host membranes by bacterial effectors","volume":"9","author":"Ham","year":"2011","journal-title":"Nat. Rev. Microbiol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B4","volume-title":"The Comprehensive Sourcebook of Bacterial Protein Toxins","author":"Alouf","year":"2005","edition":"3rd edn"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B5","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1016\/j.toxicon.2004.10.018","article-title":"Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase","volume":"45","author":"Jungo","year":"2005","journal-title":"Toxicon"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B6","doi-asserted-by":"crossref","first-page":"D325","DOI":"10.1093\/nar\/gki008","article-title":"VFDB: a reference database for bacterial virulence factors","volume":"33","author":"Chen","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B7","doi-asserted-by":"crossref","first-page":"D55","DOI":"10.1093\/nar\/gkh059","article-title":"Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities","volume":"32","author":"Mantri","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B8","doi-asserted-by":"crossref","first-page":"D391","DOI":"10.1093\/nar\/gkl791","article-title":"MvirDB\u2013a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications","volume":"35","author":"Zhou","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B9","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B10","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1007\/BF00994018","article-title":"\u2018Support-vector networks\u2019","volume":"20","author":"Cortes","year":"1995","journal-title":"Mach. Learn."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B11","first-page":"517","article-title":"Searching the MEDLINE literature database through PubMed: a short guide","volume":"28","author":"Motschall","year":"2005","journal-title":"Onkologie"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B12","doi-asserted-by":"crossref","first-page":"D25","DOI":"10.1093\/nar\/gkm929","article-title":"GenBank","volume":"36","author":"Benson","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B13","doi-asserted-by":"crossref","first-page":"680","DOI":"10.1093\/bioinformatics\/btq003","article-title":"CD-HIT Suite: a web server for clustering and comparing biological sequences","volume":"26","author":"Huang","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B14","doi-asserted-by":"crossref","first-page":"D214","DOI":"10.1093\/nar\/gkq1020","article-title":"Ongoing and future developments at the Universal Protein Resource","volume":"39","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B15","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology. The Gene Ontology Consortium","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat. Genetl"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B16","doi-asserted-by":"crossref","first-page":"1189","DOI":"10.1093\/bioinformatics\/btp033","article-title":"Jalview version 2\u2013a multiple sequence alignment editor and analysis workbench","volume":"25","author":"Waterhouse","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B17","doi-asserted-by":"crossref","first-page":"356","DOI":"10.1186\/1471-2105-10-356","article-title":"phyloXML: XML for evolutionary biology and comparative genomics","volume":"10","author":"Han","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B18","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1093\/nar\/28.1.257","article-title":"SCOP: a structural classification of proteins database","volume":"28","author":"Lo Conte","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B19","doi-asserted-by":"crossref","first-page":"D247","DOI":"10.1093\/nar\/gki024","article-title":"The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis","volume":"33","author":"Pearl","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B20","doi-asserted-by":"crossref","first-page":"D392","DOI":"10.1093\/nar\/gkq1021","article-title":"The RCSB Protein Data Bank: redesigned web site and web services","volume":"39","author":"Rose","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B21","doi-asserted-by":"crossref","first-page":"D465","DOI":"10.1093\/nar\/gkq1091","article-title":"ModBase, a database of annotated comparative protein structure models, and associated resources","volume":"39","author":"Pieper","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B22","doi-asserted-by":"crossref","first-page":"365","DOI":"10.1016\/S0968-4328(01)00035-X","article-title":"Molecular modelling in structural biology","volume":"33","author":"Forster","year":"2002","journal-title":"Micron"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B23","doi-asserted-by":"crossref","first-page":"W244","DOI":"10.1093\/nar\/gki408","article-title":"The HHpred interactive server for protein homology detection and structure prediction","volume":"33","author":"Soding","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B24","doi-asserted-by":"crossref","first-page":"404","DOI":"10.1093\/bioinformatics\/16.4.404","article-title":"The PSIPRED protein structure prediction server","volume":"16","author":"McGuffin","year":"2000","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B25","doi-asserted-by":"crossref","first-page":"145","DOI":"10.1007\/978-1-60327-058-8_8","article-title":"Protein structure modeling with MODELLER","volume":"426","author":"Eswar","year":"2008","journal-title":"Methods Mol. Biol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B26","doi-asserted-by":"crossref","first-page":"258","DOI":"10.1093\/nar\/gkg034","article-title":"STRING: a database of predicted functional associations between proteins","volume":"31","author":"von Mering","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B27","doi-asserted-by":"crossref","first-page":"1351","DOI":"10.1006\/jmbi.1999.3310","article-title":"Sequence and structure-based prediction of eukaryotic protein phosphorylation sites","volume":"294","author":"Blom","year":"1999","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B28","doi-asserted-by":"crossref","first-page":"1608","DOI":"10.1093\/bioinformatics\/btq249","article-title":"PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and pred capabilities for all prokaryotes","volume":"26","author":"Yu","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B29","first-page":"28","article-title":"Fitting a mixture model by expectation maximization to discover motifs in biopolymers","volume":"2","author":"Bailey","year":"1994","journal-title":"Proc. Int. Conf. Intell. Syst. Mol. Biol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B30","doi-asserted-by":"crossref","first-page":"783","DOI":"10.1016\/j.jmb.2004.05.028","article-title":"Improved prediction of signal peptides: SignalP 3.0","volume":"340","author":"Bendtsen","year":"2004","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B31","doi-asserted-by":"crossref","first-page":"W375","DOI":"10.1093\/nar\/gkh378","article-title":"PrediSi: prediction of signal peptides and their cleavage positions","volume":"32","author":"Hiller","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B32","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1007\/978-1-60327-118-9_13","article-title":"Prediction of peptide-MHC binding using profiles","volume":"409","author":"Reche","year":"2007","journal-title":"Methods Mol. Biol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B33","doi-asserted-by":"crossref","DOI":"10.1017\/CBO9780511790492","volume-title":"Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids","author":"Durbin","year":"1998"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B34","doi-asserted-by":"crossref","first-page":"1501","DOI":"10.1006\/jmbi.1994.1104","article-title":"Hidden Markov models in computational biology. Applications to protein modeling","volume":"235","author":"Krogh","year":"1994","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B35","doi-asserted-by":"crossref","first-page":"D281","DOI":"10.1093\/nar\/gkm960","article-title":"The Pfam protein families database","volume":"36","author":"Finn","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B36","doi-asserted-by":"crossref","first-page":"383","DOI":"10.1093\/nar\/gkg087","article-title":"CDD: a curated Entrez database of conserved domain alignments","volume":"31","author":"Marchler-Bauer","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B37","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1093\/nar\/29.1.22","article-title":"The COG database: new developments in phylogenetic classification of proteins from complete genomes","volume":"29","author":"Tatusov","year":"2001","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B38","doi-asserted-by":"crossref","first-page":"D229","DOI":"10.1093\/nar\/gkn808","article-title":"SMART 6: recent updates and new developments","volume":"37","author":"Letunic","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B39","doi-asserted-by":"crossref","first-page":"D771","DOI":"10.1093\/nar\/gkj072","article-title":"The TIGR maize database","volume":"34","author":"Chan","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B40","doi-asserted-by":"crossref","first-page":"559","DOI":"10.1002\/prot.20921","article-title":"MUSTANG: a multiple structural alignment algorithm","volume":"64","author":"Konagurthu","year":"2006","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20170512133404_gkr942-B41","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1145\/1961189.1961199","article-title":"LIBSVM: a library for support vector machines","volume":"2","author":"Chang","year":"2011","journal-title":"ACM Transact. Int. Sys. Technol."},{"key":"key\n\t\t\t\t20170512133404_gkr942-B42","doi-asserted-by":"crossref","first-page":"405","DOI":"10.3233\/ISI-2007-00298","article-title":"BTXpred: prediction of bacterial toxins","volume":"7","author":"Saha","year":"2007","journal-title":"In Silico Biol."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","deposited":{"date-parts":[[2025,3,14]],"date-time":"2025-03-14T06:47:01Z","timestamp":1741934821000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkr942"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,11,17]]},"references-count":42,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2011,11,17]]},"published-print":{"date-parts":[[2012,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkr942","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published":{"date-parts":[[2011,11,17]]}}}