{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,27]],"date-time":"2026-03-27T18:51:51Z","timestamp":1774637511671,"version":"3.50.1"},"reference-count":27,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":1413,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1093\/nar\/gks1091","type":"journal-article","created":{"date-parts":[[2012,11,23]],"date-time":"2012-11-23T04:08:44Z","timestamp":1353643724000},"page":"D396-D401","source":"Crossref","is-referenced-by-count":34,"title":["CyanoLyase: a database of phycobilin lyase sequences, motifs and functions"],"prefix":"10.1093","volume":"41","author":[{"given":"Anthony","family":"Bretaudeau","sequence":"first","affiliation":[]},{"given":"Fran\u00e7ois","family":"Coste","sequence":"additional","affiliation":[]},{"given":"Florian","family":"Humily","sequence":"additional","affiliation":[]},{"given":"Laurence","family":"Garczarek","sequence":"additional","affiliation":[]},{"given":"Gildas","family":"Le Corguill\u00e9","sequence":"additional","affiliation":[]},{"given":"Christophe","family":"Six","sequence":"additional","affiliation":[]},{"given":"Morgane","family":"Ratin","sequence":"additional","affiliation":[]},{"given":"Olivier","family":"Collin","sequence":"additional","affiliation":[]},{"given":"Wendy M.","family":"Schluchter","sequence":"additional","affiliation":[]},{"given":"Fr\u00e9d\u00e9ric","family":"Partensky","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2012,11,21]]},"reference":[{"key":"key\n\t\t\t\t20171013032207_gks1091-B1","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1006\/jmbi.1995.0203","article-title":"Evolution of the phycobiliproteins","volume":"248","author":"Apt","year":"1995","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B2","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1146\/annurev.mi.36.100182.001133","article-title":"Phycobilisomes: structure and dynamics","volume":"36","author":"Glazer","year":"1982","journal-title":"Annu. Rev. Microbiol."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B3","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1007\/978-94-011-0227-8_7","article-title":"Phycobilisome and phycobiliprotein structure","volume-title":"The Molecular Biology of Cyanobacteria","author":"Sidler","year":"1994"},{"key":"key\n\t\t\t\t20171013032207_gks1091-B4","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1007\/BF00020420","article-title":"Cryptomonad biliproteins\u2014an evolutionary perspective","volume":"46","author":"Glazer","year":"1995","journal-title":"Photosynth. Res."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B5","doi-asserted-by":"crossref","first-page":"R259","DOI":"10.1186\/gb-2007-8-12-r259","article-title":"Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study","volume":"8","author":"Six","year":"2007","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B6","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1111\/j.1365-2958.2008.06160.x","article-title":"Biliprotein maturation: the chromophore attachment","volume":"68","author":"Scheer","year":"2008","journal-title":"Mol. Microbiol."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B7","doi-asserted-by":"crossref","first-page":"211","DOI":"10.1007\/978-1-4419-1528-3_12","article-title":"Phycobiliprotein biosynthesis in cyanobacteria: structure and function of enzymes involved in post-translational modification","volume":"675","author":"Schluchter","year":"2010","journal-title":"Adv. Exp. Med. Biol."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B8","doi-asserted-by":"crossref","first-page":"14300","DOI":"10.1073\/pnas.0706209104","article-title":"Phycobilin:cystein-84 biliprotein lyase, a near-universal lyase for cysteine-84-binding sites in cyanobacterial phycobiliproteins","volume":"104","author":"Zhao","year":"2007","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20171013032207_gks1091-B9","doi-asserted-by":"crossref","first-page":"9290","DOI":"10.1074\/jbc.M809784200","article-title":"Phycourobilin in a unique trichromatic phycobiliprotein is formed post-translationally by a novel phycoerythrobilin lyase-isomerase","volume":"284","author":"Blot","year":"2009","journal-title":"J. Biol. Chem."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B10","doi-asserted-by":"crossref","first-page":"12877","DOI":"10.1074\/jbc.270.21.12877","article-title":"Candidate genes for the phycoerythrocyanin alpha subunit lyase. Biochemical analysis of pecE and pecF interposon mutants","volume":"270","author":"Jung","year":"1995","journal-title":"J. Biol. Chem."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B11","doi-asserted-by":"crossref","first-page":"12444","DOI":"10.1021\/bi010776s","article-title":"Chromophore attachment to biliproteins: specificity of PecE\/PecF, a lyase-isomerase for the photoactive 3(1)-cys-alpha 84-phycoviolobilin chromophore of phycoerythrocyanin","volume":"40","author":"Storf","year":"2001","journal-title":"Biochemistry"},{"key":"key\n\t\t\t\t20171013032207_gks1091-B12","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1016\/S0014-5793(00)01245-X","article-title":"Novel activity of a phycobiliprotein lyase: both the attachment of phycocyanobilin and the isomerization to phycoviolobilin are catalyzed by the proteins PecE and PecF encoded by the phycoerythrocyanin operon","volume":"469","author":"Zhao","year":"2000","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B13","doi-asserted-by":"crossref","first-page":"8126","DOI":"10.1021\/bi0500168","article-title":"Amino acid residues associated with enzymatic activities of the isomerizing phycoviolobilin-lyase PecE\/F","volume":"44","author":"Zhao","year":"2005","journal-title":"Biochemistry"},{"key":"key\n\t\t\t\t20171013032207_gks1091-B14","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1007\/s10811-007-9188-1","article-title":"Phycobiliproteins as a commodity: trends in applied research, patents and commercialization","volume":"20","author":"Sekar","year":"2008","journal-title":"J. Appl. Phycol."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B15","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1186\/1471-2105-10-421","article-title":"BLAST+: architecture and applications","volume":"10","author":"Camacho","year":"2009","journal-title":"BMC Bioinfo."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B16","doi-asserted-by":"crossref","first-page":"522","DOI":"10.1007\/11564096_50","article-title":"A similar fragments merging approach to learn Automata on proteins","volume-title":"Proceeding 16th European Conference on Machine Learning (ECML 2005)","author":"Coste","year":"2005"},{"key":"key\n\t\t\t\t20171013032207_gks1091-B17","doi-asserted-by":"crossref","first-page":"1074","DOI":"10.1101\/gr.10.8.1074","article-title":"Guilt by association: contextual information in genome analysis","volume":"10","author":"Aravind","year":"2000","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B18","doi-asserted-by":"crossref","first-page":"610","DOI":"10.1128\/JB.181.2.610-617.1999","article-title":"A polypeptide with similarity to phycocyanin alpha-subunit phycocyanobilin lyase involved in degradation of phycobilisomes","volume":"181","author":"Dolganov","year":"1999","journal-title":"J. Bacteriol."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B19","doi-asserted-by":"crossref","first-page":"211","DOI":"10.1093\/jb\/mvg131","article-title":"A HEAT-repeats containing protein, IaiH, stabilizes the iron-sulfur cluster bound to the cyanobacterial IscA homologue, IscA2","volume":"134","author":"Morimoto","year":"2003","journal-title":"J. Biochem."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B20","doi-asserted-by":"crossref","first-page":"D320","DOI":"10.1093\/nar\/gkm954","article-title":"MEROPS: the peptidase database","volume":"36","author":"Rawlings","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B21","doi-asserted-by":"crossref","first-page":"13126","DOI":"10.1073\/pnas.0605709103","article-title":"The cyanobacterial genome core and the origin of photosynthesis","volume":"103","author":"Mulkidjanian","year":"2006","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20171013032207_gks1091-B22","doi-asserted-by":"crossref","first-page":"363","DOI":"10.1038\/nprot.2009.2","article-title":"Protein structure prediction on the Web: a case study using the Phyre server","volume":"4","author":"Kelley","year":"2009","journal-title":"Nat. Protoc."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B23","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"Edgar","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B24","doi-asserted-by":"crossref","first-page":"1972","DOI":"10.1093\/bioinformatics\/btp348","article-title":"trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses","volume":"25","author":"Capella-Gutierrez","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013032207_gks1091-B25","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1093\/sysbio\/syq010","article-title":"New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0","volume":"59","author":"Guindon","year":"2010","journal-title":"System. Biol."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B26","doi-asserted-by":"crossref","first-page":"34093","DOI":"10.1074\/jbc.M703038200","article-title":"Lyase activities of CpcS- and CpcT-like proteins from Nostoc PCC7120 and sequential reconstitution of binding sites of phycoerythrocyanin and phycocyanin beta-subunits","volume":"282","author":"Zhao","year":"2007","journal-title":"J. Biol. Chem."},{"key":"key\n\t\t\t\t20171013032207_gks1091-B27","doi-asserted-by":"crossref","first-page":"7513","DOI":"10.1074\/jbc.M708165200","article-title":"Biogenesis of phycobiliproteins: II. CpcS-I and CpcU comprise the heterodimeric bilin lyase that attaches phycocyanobilin to Cys-82 of beta-phycocyanin and Cys-81 of allophycocyanin subunits in Synechococcus sp. PCC 7002","volume":"283","author":"Saun\u00e9e","year":"2008","journal-title":"J. Biol. Chem."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/41\/D1\/D396\/3615524\/gks1091.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,7,16]],"date-time":"2020-07-16T17:38:41Z","timestamp":1594921121000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/41\/D1\/D396\/1057071\/CyanoLyase-a-database-of-phycobilin-lyase"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,11,21]]},"references-count":27,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2012,11,21]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gks1091","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,11,21]]}}}