{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,6]],"date-time":"2026-03-06T08:13:13Z","timestamp":1772784793573,"version":"3.50.1"},"reference-count":43,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":1408,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,1,1]]},"DOI":"10.1093\/nar\/gks1139","type":"journal-article","created":{"date-parts":[[2012,11,29]],"date-time":"2012-11-29T02:05:22Z","timestamp":1354154722000},"page":"D706-D713","source":"Crossref","is-referenced-by-count":62,"title":["Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites"],"prefix":"10.1093","volume":"41","author":[{"given":"Achchuthan","family":"Shanmugasundram","sequence":"first","affiliation":[]},{"given":"Faviel F.","family":"Gonzalez-Galarza","sequence":"additional","affiliation":[]},{"given":"Jonathan M.","family":"Wastling","sequence":"additional","affiliation":[]},{"given":"Olga","family":"Vasieva","sequence":"additional","affiliation":[]},{"given":"Andrew R.","family":"Jones","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2012,11,26]]},"reference":[{"key":"key\n\t\t\t\t20171013032935_gks1139-B1","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1093\/oso\/9780199535033.003.0008","volume-title":"The Timetree of Life","author":"Bhattacharya","year":"2009"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B2","doi-asserted-by":"crossref","first-page":"2971","DOI":"10.1093\/bioinformatics\/btl505","article-title":"TimeTree: a public knowledge-base of divergence times among organisms","volume":"22","author":"Hedges","year":"2006","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B3","doi-asserted-by":"crossref","first-page":"15386","DOI":"10.1073\/pnas.0403984101","article-title":"The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils? Proc","volume":"101","author":"Douzery","year":"2004","journal-title":"Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B4","doi-asserted-by":"crossref","first-page":"e1002567","DOI":"10.1371\/journal.ppat.1002567","article-title":"Comparative genomics of the apicomplexan parasites toxoplasma gondii and neospora caninum: coccidia differing in host range and transmission strategy","volume":"8","author":"Reid","year":"2012","journal-title":"PLoS Pathog."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B5"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B6","doi-asserted-by":"crossref","first-page":"1487","DOI":"10.1016\/S0140-6736(05)66420-3","article-title":"Malaria","volume":"365","author":"Greenwood","year":"2005","journal-title":"Lancet"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B7","doi-asserted-by":"crossref","first-page":"1965","DOI":"10.1016\/S0140-6736(04)16412-X","article-title":"Toxoplasmosis","volume":"363","author":"Montoya","year":"2004","journal-title":"Lancet"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B8","doi-asserted-by":"crossref","first-page":"1195","DOI":"10.1016\/S0020-7519(99)00093-4","article-title":"Towards evaluating the economic impact of bovine neosporosis","volume":"29","author":"Trees","year":"1999","journal-title":"Int. J. Parasitol."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B9","doi-asserted-by":"crossref","first-page":"108","DOI":"10.1016\/j.jaridenv.2007.04.003","article-title":"Climate change and the tick-borne disease, Theileriosis (East Coast fever) in sub-Saharan Africa","volume":"72","author":"Olwoch","year":"2008","journal-title":"J. Arid Environ."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B10","doi-asserted-by":"crossref","first-page":"498","DOI":"10.1038\/nature01097","article-title":"Genome sequence of the human malaria parasite Plasmodium falciparum","volume":"419","author":"Gardner","year":"2002","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B11","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1038\/nature01099","article-title":"Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii","volume":"419","author":"Carlton","year":"2002","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B12","first-page":"23","article-title":"The genome of model malaria parasites, and comparative genomics","volume":"7","author":"Carlton","year":"2005","journal-title":"Curr. Issues Mol. Biol."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B13","doi-asserted-by":"crossref","first-page":"757","DOI":"10.1038\/nature07327","article-title":"Comparative genomics of the neglected human malaria parasite Plasmodium vivax","volume":"455","author":"Carlton","year":"2008","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B14","doi-asserted-by":"crossref","first-page":"799","DOI":"10.1038\/nature07306","article-title":"The genome of the simian and human malaria parasite Plasmodium knowlesi","volume":"455","author":"Pain","year":"2008","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B15","doi-asserted-by":"crossref","first-page":"D539","DOI":"10.1093\/nar\/gkn814","article-title":"PlasmoDB: a functional genomic database for malaria parasites","volume":"37","author":"Aurrecoechea","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B16","doi-asserted-by":"crossref","first-page":"D553","DOI":"10.1093\/nar\/gkm981","article-title":"ToxoDB: an integrated Toxoplasma gondii database resource","volume":"36","author":"Gajria","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B17","doi-asserted-by":"crossref","first-page":"e148","DOI":"10.1371\/journal.ppat.0030148","article-title":"Genome sequence of babesia bovis and comparative analysis of apicomplexan hemoprotozoa","volume":"3","author":"Brayton","year":"2007","journal-title":"PLoS Pathog."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B18","doi-asserted-by":"crossref","first-page":"1787","DOI":"10.1101\/gr.1555203","article-title":"Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum","volume":"13","author":"Bankier","year":"2003","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B19","doi-asserted-by":"crossref","first-page":"441","DOI":"10.1126\/science.1094786","article-title":"Complete genome sequence of the apicomplexan, Cryptosporidium parvum","volume":"304","author":"Abrahamsen","year":"2004","journal-title":"Science"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B20","doi-asserted-by":"crossref","first-page":"1107","DOI":"10.1038\/nature02977","article-title":"The genome of Cryptosporidium hominis","volume":"431","author":"Xu","year":"2004","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B21","doi-asserted-by":"crossref","first-page":"D419","DOI":"10.1093\/nar\/gkj078","article-title":"CryptoDB: a Cryptosporidium bioinformatics resource update","volume":"34","author":"Heiges","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B22","doi-asserted-by":"crossref","first-page":"134","DOI":"10.1126\/science.1110439","article-title":"Genome sequence of theileria parva, a bovine pathogen that transforms lymphocytes","volume":"309","author":"Gardner","year":"2005","journal-title":"Science"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B23","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1126\/science.1110418","article-title":"Genome of the host-cell transforming parasite Theileria annulata cmpared with T. parva","volume":"309","author":"Pain","year":"2005","journal-title":"Science"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B24","doi-asserted-by":"crossref","first-page":"D415","DOI":"10.1093\/nar\/gkp941","article-title":"EuPathDB: a portal to eukaryotic pathogen databases","volume":"38","author":"Aurrecoechea","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B25","doi-asserted-by":"crossref","first-page":"D98","DOI":"10.1093\/nar\/gkr1032","article-title":"GeneDB\u2014an annotation database for pathogens","volume":"40","author":"Logan-Klumpler","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B26","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1089\/cmb.1996.3.191","article-title":"Integrated access to metabolic and genomic data","volume":"3","author":"Karp","year":"1996","journal-title":"J. Comput. Biol."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B27","doi-asserted-by":"crossref","first-page":"275","DOI":"10.1016\/S0167-7799(99)01316-5","article-title":"Integrated pathway\u2013genome databases and their role in drug discovery","volume":"17","author":"Karp","year":"1999","journal-title":"Trends Biotechnol."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B28","doi-asserted-by":"crossref","first-page":"D583","DOI":"10.1093\/nar\/gkq1143","article-title":"EcoCyc: a comprehensive database of Escherichia coli biology","volume":"39","author":"Keseler","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B29","doi-asserted-by":"crossref","first-page":"548","DOI":"10.1016\/j.pt.2007.08.013","article-title":"Metabolic reconstruction and analysis for parasite genomes","volume":"23","author":"Pinney","year":"2007","journal-title":"Trends Parasitol."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B30","doi-asserted-by":"crossref","first-page":"D109","DOI":"10.1093\/nar\/gkr988","article-title":"KEGG for integration and interpretation of large-scale molecular data sets","volume":"40","author":"Kanehisa","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B31","doi-asserted-by":"crossref","first-page":"D473","DOI":"10.1093\/nar\/gkp875","article-title":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway\/genome databases","volume":"38","author":"Caspi","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B32","doi-asserted-by":"crossref","first-page":"D531","DOI":"10.1093\/nar\/gkn826","article-title":"metaTIGER: a metabolic evolution resource","volume":"37","author":"Whitaker","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B33","doi-asserted-by":"crossref","first-page":"238","DOI":"10.1016\/j.pt.2006.04.008","article-title":"Progress in in silico functional genomics: the malaria Metabolic Pathways database","volume":"22","author":"Ginsburg","year":"2006","journal-title":"Trends Parasitol."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B34","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1016\/j.pt.2010.11.003","article-title":"Post-genomics resources and tools for studying apicomplexan metabolism","volume":"27","author":"Hung","year":"2011","journal-title":"Trends Parasitol."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B35","doi-asserted-by":"crossref","first-page":"408","DOI":"10.1038\/msb.2010.60","article-title":"Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network","volume":"6","author":"Plata","year":"2010","journal-title":"Mol. Syst. Biol."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B36","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1186\/1752-0509-4-120","article-title":"Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis","volume":"4","author":"Huthmacher","year":"2010","journal-title":"BMC Syst. Biol."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B37","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1016\/j.pt.2008.08.012","article-title":"Caveat emptor: limitations of the automated reconstruction of metabolic pathways in Plasmodium","volume":"25","author":"Ginsburg","year":"2009","journal-title":"Trends Parasitol."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B38","doi-asserted-by":"crossref","first-page":"1573","DOI":"10.1126\/science.285.5433.1573","article-title":"Inhibitors of the nonmevalonate pathway of isoprenoid biosynthesis as antimalarial drugs","volume":"285","author":"Jomaa","year":"1999","journal-title":"Science"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B39","doi-asserted-by":"crossref","first-page":"304","DOI":"10.1093\/nar\/28.1.304","article-title":"The ENZYME database in 2000","volume":"28","author":"Bairoch","year":"2000","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B40","doi-asserted-by":"crossref","first-page":"W597","DOI":"10.1093\/nar\/gks400","article-title":"ExPASy: SIB bioinformatics resource portal","volume":"40","author":"Artimo","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B41","doi-asserted-by":"crossref","first-page":"3214","DOI":"10.1038\/sj.emboj.7601189","article-title":"Toxoplasma gondii scavenges host-derived lipoic acid despite its de novo synthesis in the apicoplast","volume":"25","author":"Crawford","year":"2006","journal-title":"EMBO J."},{"key":"key\n\t\t\t\t20171013032935_gks1139-B42","doi-asserted-by":"crossref","first-page":"e4801","DOI":"10.1371\/journal.pone.0004801","article-title":"A unique dual activity amino acid hydroxylase in Toxoplasma gondii","volume":"4","author":"Gaskell","year":"2009","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20171013032935_gks1139-B43","doi-asserted-by":"crossref","first-page":"16345","DOI":"10.1074\/jbc.M501523200","article-title":"Selective disruption of phosphatidylcholine metabolism of the intracellular parasite Toxoplasma gondii arrests its growth","volume":"280","author":"Gupta","year":"2005","journal-title":"J. Biol. Chem."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/41\/D1\/D706\/18788268\/gks1139.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,2]],"date-time":"2024-05-02T03:41:39Z","timestamp":1714621299000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/41\/D1\/D706\/1061951\/Library-of-Apicomplexan-Metabolic-Pathways-a"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,11,26]]},"references-count":43,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2012,11,26]]},"published-print":{"date-parts":[[2013,1,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gks1139","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2013,1,1]]},"published":{"date-parts":[[2012,11,26]]}}}