{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,21]],"date-time":"2026-02-21T02:09:04Z","timestamp":1771639744512,"version":"3.50.1"},"reference-count":30,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":1405,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1093\/nar\/gks1153","type":"journal-article","created":{"date-parts":[[2012,12,1]],"date-time":"2012-12-01T01:47:28Z","timestamp":1354326448000},"page":"D1144-D1151","source":"Crossref","is-referenced-by-count":161,"title":["MIPS PlantsDB: a database framework for comparative plant genome research"],"prefix":"10.1093","volume":"41","author":[{"given":"Thomas","family":"Nussbaumer","sequence":"first","affiliation":[]},{"given":"Mihaela M.","family":"Martis","sequence":"additional","affiliation":[]},{"given":"Stephan K.","family":"Roessner","sequence":"additional","affiliation":[]},{"given":"Matthias","family":"Pfeifer","sequence":"additional","affiliation":[]},{"given":"Kai C.","family":"Bader","sequence":"additional","affiliation":[]},{"given":"Sapna","family":"Sharma","sequence":"additional","affiliation":[]},{"given":"Heidrun","family":"Gundlach","sequence":"additional","affiliation":[]},{"given":"Manuel","family":"Spannagl","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2012,11,29]]},"reference":[{"key":"key\n\t\t\t\t20171013043959_gks1153-B1","doi-asserted-by":"crossref","first-page":"520","DOI":"10.1038\/nature10625","article-title":"The Medicago genome provides insight into the evolution of rhizobial symbioses","volume":"480","author":"Young","year":"2011","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B2","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1038\/nature11119","article-title":"The tomato genome sequence provides insights into fleshy fruit evolution","volume":"485","author":"Tomato Genome","year":"2012","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B3","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1104\/pp.104.059170","article-title":"BioMOBY successfully integrates distributed heterogeneous bioinformatics Web Services. The PlaNet exemplar case","volume":"138","author":"Wilkinson","year":"2005","journal-title":"Plant Physiology"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B4","doi-asserted-by":"crossref","first-page":"D373","DOI":"10.1093\/nar\/gkh068","article-title":"MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics","volume":"32","author":"Schoof","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B5","doi-asserted-by":"crossref","first-page":"711","DOI":"10.1038\/nature11543","article-title":"A physical, genetic and functional sequence assembly of the barley genome","volume":"491","author":"Consortium","year":"2012","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B6","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1093\/aob\/mci005","article-title":"Plant DNA flow cytometry and estimation of nuclear genome size","volume":"95","author":"Dolezel","year":"2005","journal-title":"Ann. Botany"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B7","doi-asserted-by":"crossref","DOI":"10.1038\/nature11650","article-title":"Analysis of the bread wheat genome using whole genome shotgun sequencing","author":"Brenchley","year":"2012","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B8","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1186\/1471-2105-13-219","article-title":"CerealsDB 2.0: an integrated resource for plant breeders and scientists","volume":"13","author":"Wilkinson","year":"2012","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B9","doi-asserted-by":"crossref","first-page":"737","DOI":"10.1016\/S0960-9822(95)00148-5","article-title":"Cereal genome evolution. Grasses, line up and form a circle","volume":"5","author":"Moore","year":"1995","journal-title":"Curr. Biol."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B10","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1016\/j.pbi.2005.01.005","article-title":"Updating the \u2018crop circle\u2019","volume":"8","author":"Devos","year":"2005","journal-title":"Curr. Opin. Plant Biol."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B11","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1104\/pp.109.142612","article-title":"Gene content and virtual gene order of barley chromosome 1 H","volume":"151","author":"Mayer","year":"2009","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B12","doi-asserted-by":"crossref","first-page":"1249","DOI":"10.1105\/tpc.110.082537","article-title":"Unlocking the barley genome by chromosomal and comparative genomics","volume":"23","author":"Mayer","year":"2011","journal-title":"Plant Cell"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B13","doi-asserted-by":"crossref","first-page":"82","DOI":"10.1186\/1471-2105-8-82","article-title":"Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms","volume":"8","author":"Sinha","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B14","doi-asserted-by":"crossref","first-page":"1772","DOI":"10.1104\/pp.108.124867","article-title":"Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids","volume":"148","author":"Lyons","year":"2008","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B15","doi-asserted-by":"crossref","first-page":"1639","DOI":"10.1101\/gr.092759.109","article-title":"Circos: an information aesthetic for comparative genomics","volume":"19","author":"Krzywinski","year":"2009","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B16","doi-asserted-by":"crossref","first-page":"2672","DOI":"10.1093\/bioinformatics\/btn529","article-title":"Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database","volume":"24","author":"Carver","year":"2008","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B17","doi-asserted-by":"crossref","first-page":"3040","DOI":"10.1093\/bioinformatics\/btp458","article-title":"CMap 1.01: a comparative mapping application for the Internet","volume":"25","author":"Youens-Clark","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B18","doi-asserted-by":"crossref","first-page":"897","DOI":"10.1109\/TVCG.2009.167","article-title":"MizBee: a multiscale synteny browser","volume":"15","author":"Meyer","year":"2009","journal-title":"IEEE Transact. Visual. Comput. Graph."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B19","doi-asserted-by":"crossref","first-page":"153","DOI":"10.1007\/978-1-59745-515-2_11","article-title":"Visualization of syntenic relationships with SynBrowse","volume":"396","author":"Brendel","year":"2007","journal-title":"Methods Mol. Biol."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B20","doi-asserted-by":"crossref","first-page":"1944","DOI":"10.1101\/gr.080978.108","article-title":"Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps","volume":"18","author":"Tang","year":"2008","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B21","doi-asserted-by":"crossref","first-page":"590","DOI":"10.1104\/pp.111.189514","article-title":"Dissecting plant genomes with the PLAZA comparative genomics platform","volume":"158","author":"Van Bel","year":"2012","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B22","doi-asserted-by":"crossref","first-page":"558","DOI":"10.1016\/j.tplants.2011.06.003","article-title":"Plant protein-coding gene families: emerging bioinformatics approaches","volume":"16","author":"Martinez","year":"2011","journal-title":"Trends Plant Sci."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B23","doi-asserted-by":"crossref","first-page":"2178","DOI":"10.1101\/gr.1224503","article-title":"OrthoMCL: identification of ortholog groups for eukaryotic genomes","volume":"13","author":"Li","year":"2003","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B24","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1159\/000084941","article-title":"LTR retrotransposons and flowering plant genome size: emergence of the increase\/decrease model","volume":"110","author":"Vitte","year":"2005","journal-title":"Cytogenet. Genome Res."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B25","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1016\/j.gene.2012.07.042","article-title":"The impact of transposable elements on eukaryotic genomes: from genome size increase to genetic adaptation to stressful environments","volume":"509","author":"Chenais","year":"2012","journal-title":"Gene"},{"key":"key\n\t\t\t\t20171013043959_gks1153-B26","doi-asserted-by":"crossref","first-page":"D360","DOI":"10.1093\/nar\/gkh099","article-title":"The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants","volume":"32","author":"Ouyang","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B27","doi-asserted-by":"crossref","first-page":"462","DOI":"10.1159\/000084979","article-title":"Repbase Update, a database of eukaryotic repetitive elements","volume":"110","author":"Jurka","year":"2005","journal-title":"Cytogenet. Genome Res."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B28","doi-asserted-by":"crossref","first-page":"D834","DOI":"10.1093\/nar\/gkl945","article-title":"MIPSPlantsDB\u2013plant database resource for integrative and comparative plant genome research","volume":"35","author":"Spannagl","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B29","doi-asserted-by":"crossref","first-page":"973","DOI":"10.1038\/nrg2165","article-title":"A unified classification system for eukaryotic transposable elements","volume":"8","author":"Wicker","year":"2007","journal-title":"Nat. Rev. Genet."},{"key":"key\n\t\t\t\t20171013043959_gks1153-B30","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1038\/nrg2165-c1","article-title":"A universal classification of eukaryotic transposable elements implemented in Repbase","volume":"9","author":"Kapitonov","year":"2008","journal-title":"Nat. Rev. Genet."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/41\/D1\/D1144\/3651266\/gks1153.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,7,6]],"date-time":"2019-07-06T08:49:11Z","timestamp":1562402951000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/41\/D1\/D1144\/1063372\/MIPS-PlantsDB-a-database-framework-for-comparative"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,11,29]]},"references-count":30,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2012,11,29]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gks1153","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,11,29]]}}}