{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T05:11:32Z","timestamp":1773292292599,"version":"3.50.1"},"reference-count":35,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":1408,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1093\/nar\/gks1168","type":"journal-article","created":{"date-parts":[[2012,11,29]],"date-time":"2012-11-29T02:05:22Z","timestamp":1354154722000},"page":"D252-D257","source":"Crossref","is-referenced-by-count":129,"title":["miRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting"],"prefix":"10.1093","volume":"41","author":[{"given":"Sooyoung","family":"Cho","sequence":"first","affiliation":[]},{"given":"Insu","family":"Jang","sequence":"additional","affiliation":[]},{"given":"Yukyung","family":"Jun","sequence":"additional","affiliation":[]},{"given":"Suhyeon","family":"Yoon","sequence":"additional","affiliation":[]},{"given":"Minjeong","family":"Ko","sequence":"additional","affiliation":[]},{"given":"Yeajee","family":"Kwon","sequence":"additional","affiliation":[]},{"given":"Ikjung","family":"Choi","sequence":"additional","affiliation":[]},{"given":"Hyeshik","family":"Chang","sequence":"additional","affiliation":[]},{"given":"Daeun","family":"Ryu","sequence":"additional","affiliation":[]},{"given":"Byungwook","family":"Lee","sequence":"additional","affiliation":[]},{"given":"V. Narry","family":"Kim","sequence":"additional","affiliation":[]},{"given":"Wankyu","family":"Kim","sequence":"additional","affiliation":[]},{"given":"Sanghyuk","family":"Lee","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2012,11,26]]},"reference":[{"key":"key\n\t\t\t\t20171013032959_gks1168-B1","doi-asserted-by":"crossref","first-page":"D152","DOI":"10.1093\/nar\/gkq1027","article-title":"miRBase: integrating microRNA annotation and deep-sequencing data","volume":"39","author":"Kozomara","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B2","doi-asserted-by":"crossref","first-page":"D806","DOI":"10.1093\/nar\/gkp818","article-title":"PMRD: plant microRNA database","volume":"38","author":"Zhang","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B3","doi-asserted-by":"crossref","first-page":"D198","DOI":"10.1093\/nar\/gkr1159","article-title":"miRNEST database: an integrative approach in microRNA search and annotation","volume":"40","author":"Szczesniak","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B4","doi-asserted-by":"crossref","first-page":"D141","DOI":"10.1093\/nar\/gkq1129","article-title":"Rfam: wikipedia, clans and the \u201cdecimal\u201d release","volume":"39","author":"Gardner","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B5","doi-asserted-by":"crossref","first-page":"D105","DOI":"10.1093\/nar\/gkn851","article-title":"miRecords: an integrated resource for microRNA-target interactions","volume":"37","author":"Xiao","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B6","doi-asserted-by":"crossref","first-page":"D222","DOI":"10.1093\/nar\/gkr1161","article-title":"TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support","volume":"40","author":"Vergoulis","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B7","doi-asserted-by":"crossref","first-page":"D163","DOI":"10.1093\/nar\/gkq1107","article-title":"miRTarBase: a database curates experimentally validated microRNA-target interactions","volume":"39","author":"Hsu","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B8","doi-asserted-by":"crossref","first-page":"1139","DOI":"10.1038\/nsmb.2115","article-title":"Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs","volume":"18","author":"Garcia","year":"2011","journal-title":"Nat. Struct. Mol. Biol."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B9","doi-asserted-by":"crossref","first-page":"D149","DOI":"10.1093\/nar\/gkm995","article-title":"The microRNA.org resource: targets and expression","volume":"36","author":"Betel","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B10","doi-asserted-by":"crossref","first-page":"1278","DOI":"10.1038\/ng2135","article-title":"The role of site accessibility in microRNA target recognition","volume":"39","author":"Kertesz","year":"2007","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B11","doi-asserted-by":"crossref","first-page":"495","DOI":"10.1038\/ng1536","article-title":"Combinatorial microRNA target predictions","volume":"37","author":"Krek","year":"2005","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B12","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1093\/bioinformatics\/btm595","article-title":"Prediction of both conserved and nonconserved microRNA targets in animals","volume":"24","author":"Wang","year":"2008","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013032959_gks1168-B13","doi-asserted-by":"crossref","first-page":"e13534","DOI":"10.1371\/journal.pone.0013534","article-title":"Exprtarget: an integrative approach to predicting human microRNA targets","volume":"5","author":"Gamazon","year":"2010","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20171013032959_gks1168-B14","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/j.gene.2011.03.005","article-title":"HOCTAR database: a unique resource for microRNA target prediction","volume":"480","author":"Gennarino","year":"2011","journal-title":"Gene"},{"key":"key\n\t\t\t\t20171013032959_gks1168-B15","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1186\/1471-2229-12-68","article-title":"miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations","volume":"12","author":"Liu","year":"2012","journal-title":"BMC Plant. Biol."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B16","doi-asserted-by":"crossref","first-page":"1398","DOI":"10.1101\/gr.106054.110","article-title":"A comprehensive survey of 3\u2032 animal miRNA modification events and a possible role for 3\u2032 adenylation in modulating miRNA targeting effectiveness","volume":"20","author":"Burroughs","year":"2010","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B17","doi-asserted-by":"crossref","first-page":"D123","DOI":"10.1093\/nar\/gkp943","article-title":"deepBase: a database for deeply annotating and mining deep sequencing data","volume":"38","author":"Yang","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B18","doi-asserted-by":"crossref","first-page":"W392","DOI":"10.1093\/nar\/gkq393","article-title":"mirTools: microRNA profiling and discovery based on high-throughput sequencing","volume":"38","author":"Zhu","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B19","doi-asserted-by":"crossref","first-page":"W68","DOI":"10.1093\/nar\/gkp347","article-title":"miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments","volume":"37","author":"Hackenberg","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B20","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1007\/s11103-012-9885-2","article-title":"miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs","volume":"80","author":"Xie","year":"2012","journal-title":"Plant Mol. Biol."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B21","doi-asserted-by":"crossref","first-page":"D1005","DOI":"10.1093\/nar\/gkq1184","article-title":"NCBI GEO: archive for functional genomics data sets\u201310 years on","volume":"39","author":"Barrett","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B22"},{"key":"key\n\t\t\t\t20171013032959_gks1168-B23"},{"key":"key\n\t\t\t\t20171013032959_gks1168-B24","doi-asserted-by":"crossref","first-page":"1222","DOI":"10.1101\/gr.985203","article-title":"eVOC: a controlled vocabulary for unifying gene expression data","volume":"13","author":"Kelso","year":"2003","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B25","first-page":"67","article-title":"The MeSH translation maintenance system: structure, interface design, and implementation","volume":"107","author":"Nelson","year":"2004","journal-title":"Stud. Health Technol. Inform."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B26","doi-asserted-by":"crossref","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","article-title":"Ultrafast and memory-efficient alignment of short DNA sequences to the human genome","volume":"10","author":"Langmead","year":"2009","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B27","doi-asserted-by":"crossref","first-page":"10","DOI":"10.14806\/ej.17.1.200","article-title":"Cutadapt removes adapter sequences from high-throughput sequencing reads","volume":"17","author":"Martin","year":"2011","journal-title":"EMBnet.journal"},{"key":"key\n\t\t\t\t20171013032959_gks1168-B28","doi-asserted-by":"crossref","first-page":"D91","DOI":"10.1093\/nar\/gkr895","article-title":"Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species","volume":"40","author":"Kersey","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B29","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1093\/nar\/gkr688","article-title":"miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades","volume":"40","author":"Friedlander","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B30","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1093\/bioinformatics\/btp616","article-title":"edgeR: a Bioconductor package for differential expression analysis of digital gene expression data","volume":"26","author":"Robinson","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013032959_gks1168-B31","doi-asserted-by":"crossref","first-page":"1105","DOI":"10.1093\/bioinformatics\/btp120","article-title":"TopHat: discovering splice junctions with RNA-Seq","volume":"25","author":"Trapnell","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013032959_gks1168-B32","doi-asserted-by":"crossref","first-page":"562","DOI":"10.1038\/nprot.2012.016","article-title":"Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks","volume":"7","author":"Trapnell","year":"2012","journal-title":"Nat. Protoc."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B33","doi-asserted-by":"crossref","DOI":"10.1002\/0471250953.bi1202s26","article-title":"RNA secondary structure analysis using the Vienna RNA package","author":"Hofacker","year":"2009","journal-title":"Curr. Protoc. Bioinformatics"},{"key":"key\n\t\t\t\t20171013032959_gks1168-B34","doi-asserted-by":"crossref","first-page":"D140","DOI":"10.1093\/nar\/gkj112","article-title":"miRBase: microRNA sequences, targets and gene nomenclature","volume":"34","author":"Griffiths-Jones","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013032959_gks1168-B35","doi-asserted-by":"crossref","first-page":"825","DOI":"10.1093\/nar\/gkq832","article-title":"MiRNA-miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features","volume":"39","author":"Xu","year":"2011","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/41\/D1\/D252\/3668533\/gks1168.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:39:59Z","timestamp":1522679999000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/41\/D1\/D252\/1066239\/miRGator-v30-a-microRNA-portal-for-deep-sequencing"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,11,26]]},"references-count":35,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2012,11,26]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gks1168","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,11,26]]}}}