{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,7]],"date-time":"2026-07-07T14:09:51Z","timestamp":1783433391025,"version":"3.54.6"},"reference-count":31,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":1404,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1093\/nar\/gks1169","type":"journal-article","created":{"date-parts":[[2012,12,1]],"date-time":"2012-12-01T21:50:03Z","timestamp":1354398603000},"page":"D524-D529","source":"Crossref","is-referenced-by-count":266,"title":["PDBTM: Protein Data Bank of transmembrane proteins after 8 years"],"prefix":"10.1093","volume":"41","author":[{"given":"D\u00e1niel","family":"Kozma","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Istv\u00e1n","family":"Simon","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"G\u00e1bor E.","family":"Tusn\u00e1dy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2012,11,30]]},"reference":[{"key":"key\n\t\t\t\t20171013050658_gks1169-B1","doi-asserted-by":"crossref","first-page":"993","DOI":"10.1038\/nrd2199","article-title":"How many drug targets are there?","volume":"5","author":"Overington","year":"2006","journal-title":"Nat. Rev. Drug Discov."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B2","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1002\/cmdc.200800070","article-title":"Crystal structures of a second G protein-coupled receptor: triumphs and implications","volume":"3","author":"Parrill","year":"2008","journal-title":"ChemMedChem"},{"key":"key\n\t\t\t\t20171013050658_gks1169-B3","doi-asserted-by":"crossref","first-page":"1141","DOI":"10.1002\/pmic.200900258","article-title":"Prediction of the human membrane proteome","volume":"10","author":"Fagerberg","year":"2010","journal-title":"Proteomics"},{"key":"key\n\t\t\t\t20171013050658_gks1169-B4","doi-asserted-by":"crossref","first-page":"D392","DOI":"10.1093\/nar\/gkq1021","article-title":"The RCSB Protein Data Bank: redesigned web site and web services","volume":"39","author":"Rose","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B5","doi-asserted-by":"crossref","first-page":"2964","DOI":"10.1093\/bioinformatics\/bth340","article-title":"Transmembrane proteins in the Protein Data Bank: identification and classification","volume":"20","author":"Tusn\u00e1dy","year":"2004","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013050658_gks1169-B6","doi-asserted-by":"crossref","first-page":"D275","DOI":"10.1093\/nar\/gki002","article-title":"PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank","volume":"33","author":"Tusn\u00e1dy","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B7","doi-asserted-by":"crossref","first-page":"1276","DOI":"10.1093\/bioinformatics\/bti121","article-title":"TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates","volume":"21","author":"Tusn\u00e1dy","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013050658_gks1169-B8","doi-asserted-by":"crossref","first-page":"D370","DOI":"10.1093\/nar\/gkr703","article-title":"OPM database and PPM web server: resources for positioning of proteins in membranes","volume":"40","author":"Lomize","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B9","doi-asserted-by":"crossref","first-page":"1318","DOI":"10.1110\/ps.062126106","article-title":"Positioning of proteins in membranes: a computational approach","volume":"15","author":"Lomize","year":"2006","journal-title":"Protein Sci."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B10","doi-asserted-by":"crossref","first-page":"662","DOI":"10.1080\/09687680802446534","article-title":"CGDB: a database of membrane protein\/lipid interactions by coarse-grained molecular dynamics simulations","volume":"25","author":"Chetwynd","year":"2008","journal-title":"Mol. Membr. Biol."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B11","doi-asserted-by":"crossref","first-page":"D324","DOI":"10.1093\/nar\/gkq863","article-title":"OMPdb: a database of beta-barrel outer membrane proteins from Gram-negative bacteria","volume":"39","author":"Tsirigos","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B12","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1007\/s00018-005-5350-6","article-title":"The Membrane Protein Data Bank","volume":"63","author":"Raman","year":"2006","journal-title":"Cell. Mol. Life Sci."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B13","doi-asserted-by":"crossref","first-page":"D290","DOI":"10.1093\/nar\/gkr1065","article-title":"The Pfam protein families database","volume":"40","author":"Punta","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B14","doi-asserted-by":"crossref","first-page":"D201","DOI":"10.1093\/nar\/gkn672","article-title":"TMFunction: database for functional residues in membrane proteins","volume":"37","author":"Gromiha","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B15","doi-asserted-by":"crossref","first-page":"D274","DOI":"10.1093\/nar\/gkn862","article-title":"The Transporter Classification Database: recent advances","volume":"37","author":"Saier","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B16","doi-asserted-by":"crossref","first-page":"D314","DOI":"10.1093\/nar\/gkl805","article-title":"TMBETA-GENOME: database for annotated beta-barrel membrane proteins in genomic sequences","volume":"35","author":"Gromiha","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B17","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1016\/j.jsb.2011.10.008","article-title":"Membrane protein structural bioinformatics","volume":"179","author":"Nugent","year":"2011","journal-title":"J. Struct. Biol."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B18","doi-asserted-by":"crossref","first-page":"358","DOI":"10.1016\/S0968-0004(98)01253-5","article-title":"PQS: a protein quaternary structure file server","volume":"23","author":"Henrick","year":"1998","journal-title":"Trends Biochem. Sci."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B19","doi-asserted-by":"crossref","first-page":"774","DOI":"10.1016\/j.jmb.2007.05.022","article-title":"Inference of macromolecular assemblies from crystalline state","volume":"372","author":"Krissinel","year":"2007","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B20","doi-asserted-by":"crossref","first-page":"2302","DOI":"10.1093\/nar\/gki524","article-title":"TM-align: a protein structure alignment algorithm based on the TM-score","volume":"33","author":"Zhang","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B21","doi-asserted-by":"crossref","first-page":"264","DOI":"10.1016\/S0014-5793(99)00218-5","article-title":"Unique topology of the internal repeats in the cardiac Na+\/Ca2+ exchanger","volume":"446","author":"Iwamoto","year":"1999","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B22","doi-asserted-by":"crossref","first-page":"206","DOI":"10.1016\/S0014-5793(01)02743-0","article-title":"A refined structure of human aquaporin-1","volume":"504","author":"de Groot","year":"2001","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B23","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1038\/35102009","article-title":"Chemistry of ion coordination and hydration revealed by a K+ channel\u2013Fab complex at 2.0 \u00c5 resolution","volume":"414","author":"Zhou","year":"2001","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013050658_gks1169-B24","doi-asserted-by":"crossref","first-page":"287","DOI":"10.1038\/415287a","article-title":"X-ray structure of a ClC chloride channel at 3.0 \u00c5 reveals the molecular basis of anion selectivity","volume":"415","author":"Dutzler","year":"2002","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013050658_gks1169-B25","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1007\/s00249-003-0382-z","article-title":"Structural themes in ion channels","volume":"33","author":"Doyle","year":"2004","journal-title":"Eur. Biophys. J."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B26","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1016\/S0014-5793(03)01126-8","article-title":"The structures of BtuCD and MscS and their implications for transporter and channel function","volume":"555","author":"Bass","year":"2003","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B27","doi-asserted-by":"crossref","first-page":"909","DOI":"10.1038\/35082000","article-title":"Three-dimensional structure of cyanobacterial photosystem I at 2.5 \u00c5 resolution","volume":"411","author":"Jordan","year":"2001","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013050658_gks1169-B28","doi-asserted-by":"crossref","first-page":"1820","DOI":"10.1046\/j.1432-1327.2001.02053.x","article-title":"A third crystal form of Wolinella succinogenes quinol:fumarate reductase reveals domain closure at the site of fumarate reduction","volume":"268","author":"Lancaster","year":"2001","journal-title":"Eur. J. Biochem."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B29","doi-asserted-by":"crossref","first-page":"871","DOI":"10.1023\/A:1023813504011","article-title":"AstexViewer: a visualisation aid for structure-based drug design","volume":"16","author":"Hartshorn","year":"2002","journal-title":"J. Comput. Aided Mol. Des."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B30","doi-asserted-by":"crossref","first-page":"W329","DOI":"10.1093\/nar\/gks488","article-title":"CMWeb: an interactive on-line tool for analysing residue\u2013residue contacts and contact prediction methods","volume":"40","author":"Kozma","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013050658_gks1169-B31","doi-asserted-by":"crossref","first-page":"D355","DOI":"10.1093\/nar\/gkn860","article-title":"PDBsum new things","volume":"37","author":"Laskowski","year":"2009","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/41\/D1\/D524\/3669479\/gks1169.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T10:39:59Z","timestamp":1522665599000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/41\/D1\/D524\/1066376\/PDBTM-Protein-Data-Bank-of-transmembrane-proteins"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,11,30]]},"references-count":31,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2012,11,30]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gks1169","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,11,30]]}}}