{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T04:22:29Z","timestamp":1773289349590,"version":"3.50.1"},"reference-count":26,"publisher":"Oxford University Press (OUP)","issue":"W1","license":[{"start":{"date-parts":[[2016,10,5]],"date-time":"2016-10-05T00:00:00Z","timestamp":1475625600000},"content-version":"vor","delay-in-days":1581,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,7,1]]},"DOI":"10.1093\/nar\/gks458","type":"journal-article","created":{"date-parts":[[2012,6,9]],"date-time":"2012-06-09T03:23:46Z","timestamp":1339212226000},"page":"W484-W490","source":"Crossref","is-referenced-by-count":80,"title":["IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks"],"prefix":"10.1093","volume":"40","author":[{"given":"Aaron K.","family":"Wong","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christopher Y.","family":"Park","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Casey S.","family":"Greene","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lars A.","family":"Bongo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yuanfang","family":"Guan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Olga G.","family":"Troyanskaya","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2012,6,7]]},"reference":[{"key":"key\n\t\t\t\t20170720163100_gks458-B1","doi-asserted-by":"crossref","first-page":"W193","DOI":"10.1093\/nar\/gkm226","article-title":"g:Profiler: a web-based toolset for functional profiling of gene lists from large-scale experiments","volume":"35","author":"Reimand","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B2","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1038\/nprot.2008.211","article-title":"Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources","volume":"4","author":"Huang","year":"2009","journal-title":"Nat. Protoc."},{"key":"key\n\t\t\t\t20170720163100_gks458-B3","doi-asserted-by":"crossref","first-page":"W214","DOI":"10.1093\/nar\/gkq537","article-title":"The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function","volume":"38","author":"Warde-Farley","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B4","doi-asserted-by":"crossref","first-page":"R114","DOI":"10.1186\/gb-2005-6-13-r114","article-title":"Discovery of biological networks from diverse functional genomic data","volume":"6","author":"Myers","year":"2005","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20170720163100_gks458-B5","doi-asserted-by":"crossref","first-page":"e1000165","DOI":"10.1371\/journal.pcbi.1000165","article-title":"A genomewide functional network for the laboratory mouse","volume":"4","author":"Guan","year":"2008","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20170720163100_gks458-B6","doi-asserted-by":"crossref","DOI":"10.1002\/0471250953.bi0911s23","article-title":"Browsing multidimensional molecular networks with the generic network browser (N-Browse)","author":"Kao","year":"2008","journal-title":"Curr. Protoc. Bioinformatics"},{"key":"key\n\t\t\t\t20170720163100_gks458-B7","doi-asserted-by":"crossref","first-page":"258","DOI":"10.1093\/nar\/gkg034","article-title":"STRING: a database of predicted functional associations between proteins","volume":"31","author":"Mering,von","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B8","doi-asserted-by":"crossref","first-page":"D821","DOI":"10.1093\/nar\/gkr1062","article-title":"Comparative interactomics with Funcoup 2.0","volume":"40","author":"Alexeyenko","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B9","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology. The Gene Ontology Consortium","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t20170720163100_gks458-B10","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20170720163100_gks458-B11","doi-asserted-by":"crossref","first-page":"e1001074","DOI":"10.1371\/journal.pcbi.1001074","article-title":"Accurate quantification of functional analogy among close homologs","volume":"7","author":"Chikina","year":"2011","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20170720163100_gks458-B12","doi-asserted-by":"crossref","first-page":"2715","DOI":"10.1093\/nar\/23.14.2715","article-title":"Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions","volume":"23","author":"Eisen","year":"1995","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B13","doi-asserted-by":"crossref","first-page":"1093","DOI":"10.1101\/gr.082214.108","article-title":"Exploring the human genome with functional maps","volume":"19","author":"Huttenhower","year":"2009","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B14","doi-asserted-by":"crossref","first-page":"D698","DOI":"10.1093\/nar\/gkq1116","article-title":"The BioGRID Interaction Database: 2011 update","volume":"39","author":"Stark","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B15","doi-asserted-by":"crossref","first-page":"D857","DOI":"10.1093\/nar\/gkr930","article-title":"MINT, the molecular interaction database: 2012 update","volume":"40","author":"Licata","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B16","doi-asserted-by":"crossref","first-page":"D841","DOI":"10.1093\/nar\/gkr1088","article-title":"The IntAct molecular interaction database in 2012","volume":"40","author":"Kerrien","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B17","doi-asserted-by":"crossref","first-page":"D742","DOI":"10.1093\/nar\/gkr1014","article-title":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway\/genome databases","volume":"40","author":"Caspi","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B18","doi-asserted-by":"crossref","first-page":"D572","DOI":"10.1093\/nar\/gkj118","article-title":"TreeFam: a curated database of phylogenetic trees of animal gene families","volume":"34","author":"Li","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B19","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1007\/978-1-61779-400-1_2","article-title":"The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals","volume":"802","author":"Kotera","year":"2012","journal-title":"Methods Mol. Biol."},{"key":"key\n\t\t\t\t20170720163100_gks458-B20","doi-asserted-by":"crossref","first-page":"D619","DOI":"10.1093\/nar\/gkn863","article-title":"Reactome knowledgebase of human biological pathways and processes","volume":"37","author":"Matthews","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170720163100_gks458-B21","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","article-title":"Controlling the false discovery rate: a practical and powerful approach to multiple testing","volume":"57","author":"Benjamini","year":"1995","journal-title":"J. R. Stat. Soc. Ser. B"},{"key":"key\n\t\t\t\t20170720163100_gks458-B22","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1038\/85798","article-title":"DNA double-strand breaks: signaling, repair and the cancer connection","volume":"27","author":"Khanna","year":"2001","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t20170720163100_gks458-B23","doi-asserted-by":"crossref","first-page":"e1000991","DOI":"10.1371\/journal.pcbi.1000991","article-title":"Functional genomics complements quantitative genetics in identifying disease-gene associations","volume":"6","author":"Guan","year":"2010","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20170720163100_gks458-B24","doi-asserted-by":"crossref","first-page":"1120","DOI":"10.1101\/gad.10.9.1120","article-title":"Posterior patterning by the Caenorhabditis elegans even-skipped homolog vab-7","volume":"10","author":"Ahringer","year":"1996","journal-title":"Genes Dev."},{"key":"key\n\t\t\t\t20170720163100_gks458-B25","doi-asserted-by":"crossref","first-page":"3564","DOI":"10.1073\/pnas.1000389107","article-title":"Induction and patterning of trunk and tail neural ectoderm by the homeobox gene eve1 in zebrafish embryos","volume":"107","author":"Cruz","year":"2010","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20170720163100_gks458-B26","doi-asserted-by":"crossref","first-page":"S2","DOI":"10.1186\/gb-2008-9-s1-s2","article-title":"A critical assessment of Mus musculus gene function prediction using integrated genomic evidence","volume":"9","author":"Pe\u00f1a-Castillo","year":"2008","journal-title":"Genome Biol."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/40\/W1\/W484\/18783687\/gks458.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,4,25]],"date-time":"2024-04-25T04:27:38Z","timestamp":1714019258000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gks458"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,6,7]]},"references-count":26,"journal-issue":{"issue":"W1","published-online":{"date-parts":[[2012,6,7]]},"published-print":{"date-parts":[[2012,7,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gks458","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,6,7]]}}}