{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,29]],"date-time":"2026-04-29T05:17:23Z","timestamp":1777439843177,"version":"3.51.4"},"reference-count":26,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":1440,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1093\/nar\/gks987","type":"journal-article","created":{"date-parts":[[2012,10,27]],"date-time":"2012-10-27T02:22:31Z","timestamp":1351304551000},"page":"D470-D474","source":"Crossref","is-referenced-by-count":46,"title":["Glycan fragment database: a database of PDB-based glycan 3D structures"],"prefix":"10.1093","volume":"41","author":[{"given":"Sunhwan","family":"Jo","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wonpil","family":"Im","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2012,10,25]]},"reference":[{"key":"key\n\t\t\t\t20171013043137_gks987-B1","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1016\/j.tibtech.2004.07.012","article-title":"Sugar-mediated ligand\u2013receptor interactions in the immune system","volume":"22","author":"Rudd","year":"2004","journal-title":"Trends Biotech."},{"key":"key\n\t\t\t\t20171013043137_gks987-B2","doi-asserted-by":"crossref","first-page":"600","DOI":"10.1016\/j.sbi.2006.08.007","article-title":"Structural aspects of glycomes with a focus on N-glycosylation and glycoprotein folding","volume":"16","author":"Petrescu","year":"2006","journal-title":"Curr. Opin. Struct. Biol."},{"key":"key\n\t\t\t\t20171013043137_gks987-B3","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1021\/cr990368i","article-title":"Conformational studies of oligosaccharides and glycopeptides: Complementarity of NMR, X-ray crystallography, and molecular modelling","volume":"102","author":"Wormald","year":"2002","journal-title":"Chem. Rev."},{"key":"key\n\t\t\t\t20171013043137_gks987-B4","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1038\/440435a","article-title":"Avian flu: influenza virus receptors in the human airway","volume":"440","author":"Shinya","year":"2006","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013043137_gks987-B5","doi-asserted-by":"crossref","first-page":"531","DOI":"10.1146\/annurev.biochem.69.1.531","article-title":"Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin","volume":"69","author":"Skehel","year":"2000","journal-title":"Annu. Rev. Biochem."},{"key":"key\n\t\t\t\t20171013043137_gks987-B6","doi-asserted-by":"crossref","first-page":"9570","DOI":"10.1073\/pnas.0802206105","article-title":"Golgi alpha-mannosidase II cleaves two sugars sequentially in the same catalytic site","volume":"105","author":"Shah","year":"2008","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20171013043137_gks987-B7","doi-asserted-by":"crossref","first-page":"8975","DOI":"10.1021\/ja711248y","article-title":"Probing the substrate specificity of Golgi alpha-mannosidase II by use of synthetic oligosaccharides and a catalytic nucleophile mutant","volume":"130","author":"Zhong","year":"2008","journal-title":"J. Am. Chem. Soc."},{"key":"key\n\t\t\t\t20171013043137_gks987-B8","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1016\/S0022-2836(63)80023-6","article-title":"Stereochemistry of polypeptide chain configurations","volume":"7","author":"Ramachandran","year":"1963","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20171013043137_gks987-B9","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1016\/S0065-3233(08)60402-7","article-title":"Conformation of polypeptides and proteins","volume":"23","author":"Ramachandran","year":"1968","journal-title":"Adv. Protein Chem."},{"key":"key\n\t\t\t\t20171013043137_gks987-B10","doi-asserted-by":"crossref","first-page":"768","DOI":"10.1107\/S0907444902003359","article-title":"Conformations of amino acids in proteins","volume":"58","author":"Hovmoller","year":"2002","journal-title":"Acta Crystallogr. D Biol. Crystallogr."},{"key":"key\n\t\t\t\t20171013043137_gks987-B11","doi-asserted-by":"crossref","first-page":"2508","DOI":"10.1110\/ps.03235203","article-title":"Revisiting the Ramachandran plot: hard-sphere repulsion, electrostatics, and H-bonding in the alpha-helix","volume":"12","author":"Ho","year":"2003","journal-title":"Protein Sci."},{"key":"key\n\t\t\t\t20171013043137_gks987-B12","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1073\/pnas.1014674107","article-title":"Redrawing the Ramachandran plot after inclusion of hydrogen-bonding constraints","volume":"108","author":"Porter","year":"2011","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20171013043137_gks987-B13","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/nar\/28.1.235","article-title":"The Protein Data Bank","volume":"28","author":"Berman","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043137_gks987-B14","doi-asserted-by":"crossref","first-page":"1015","DOI":"10.1016\/j.carres.2003.09.038","article-title":"Data mining the protein data bank: automatic detection and assignment of carbohydrate structures","volume":"339","author":"L\u00fctteke","year":"2004","journal-title":"Carbohydr. Res."},{"key":"key\n\t\t\t\t20171013043137_gks987-B15","doi-asserted-by":"crossref","first-page":"3135","DOI":"10.1002\/jcc.21886","article-title":"Glycan Reader: automated sugar identification and simulation preparation for carbohydrates and glycoproteins","volume":"32","author":"Jo","year":"2011","journal-title":"J. Comput. Chem."},{"key":"key\n\t\t\t\t20171013043137_gks987-B16","doi-asserted-by":"crossref","first-page":"343","DOI":"10.1093\/glycob\/9.4.343","article-title":"A statistical analysis of N- and O-glycan linkage conformations from crystallographic data","volume":"9","author":"Petrescu","year":"1999","journal-title":"Glycobiology"},{"key":"key\n\t\t\t\t20171013043137_gks987-B17","doi-asserted-by":"crossref","first-page":"103","DOI":"10.1093\/glycob\/cwh008","article-title":"Statistical analysis of the protein environment of N-glycosylation sites: implications for occupancy, structure, and folding","volume":"14","author":"Petrescu","year":"2004","journal-title":"Glycobiology"},{"key":"key\n\t\t\t\t20171013043137_gks987-B18","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1107\/S0907444909001905","article-title":"Analysis and validation of carbohydrate three-dimensional structures","volume":"65","author":"L\u00fctteke","year":"2009","journal-title":"Acta Crystallogr. D Biol. Crystallogr."},{"key":"key\n\t\t\t\t20171013043137_gks987-B19","doi-asserted-by":"crossref","first-page":"3684","DOI":"10.1039\/c003958f","article-title":"Population distribution of flexible molecules from maximum entropy analysis using different priors as background information: application to the \u03a6, \u03a8-conformational space of the \u03b1-(1\u2014>2)-linked mannose disaccharide present in N- and O-linked glycoproteins","volume":"8","author":"S\u00e4w\u00e9n","year":"2010","journal-title":"Org. Biomol. Chem."},{"key":"key\n\t\t\t\t20171013043137_gks987-B20","volume-title":"Conformation of Carbohydrates","author":"Rao","year":"1998"},{"key":"key\n\t\t\t\t20171013043137_gks987-B21","doi-asserted-by":"crossref","first-page":"1545","DOI":"10.1002\/jcc.21287","article-title":"CHARMM: the biomolecular simulation program","volume":"30","author":"Brooks","year":"2009","journal-title":"J. Comput. Chem."},{"key":"key\n\t\t\t\t20171013043137_gks987-B22","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1186\/1472-6807-8-35","article-title":"Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans","volume":"8","author":"Herget","year":"2008","journal-title":"BMC Struct. Biol."},{"key":"key\n\t\t\t\t20171013043137_gks987-B23","doi-asserted-by":"crossref","first-page":"63R","DOI":"10.1093\/glycob\/cwj010","article-title":"KEGG as a glycome informatics resource","volume":"16","author":"Hashimoto","year":"2006","journal-title":"Glycobiology"},{"key":"key\n\t\t\t\t20171013043137_gks987-B24","doi-asserted-by":"crossref","first-page":"D368","DOI":"10.1093\/nar\/gkm833","article-title":"Glycoconjugate Data Bank: structures\u2014an annotated glycan structure database and N-glycan primary structure verification service","volume":"36","author":"Nakahara","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043137_gks987-B25","doi-asserted-by":"crossref","first-page":"287","DOI":"10.1093\/nar\/gkl907","article-title":"GlycoMapsDB: a database of the accessible conformational space of glycosidic linkages","volume":"35","author":"Frank","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043137_gks987-B26","doi-asserted-by":"crossref","first-page":"D242","DOI":"10.1093\/nar\/gki013","article-title":"Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB","volume":"33","author":"L\u00fctteke","year":"2005","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/41\/D1\/D470\/3728710\/gks987.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:40:44Z","timestamp":1522680044000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/41\/D1\/D470\/1075092\/Glycan-fragment-database-a-database-of-PDBbased"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,10,25]]},"references-count":26,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2012,10,25]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gks987","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,10,25]]}}}