{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,2]],"date-time":"2026-04-02T13:02:18Z","timestamp":1775134938582,"version":"3.50.1"},"reference-count":34,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":1435,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,1,1]]},"DOI":"10.1093\/nar\/gks997","type":"journal-article","created":{"date-parts":[[2012,11,1]],"date-time":"2012-11-01T01:09:58Z","timestamp":1351732198000},"page":"D125-D131","source":"Crossref","is-referenced-by-count":131,"title":["SpliceAid-F: a database of human splicing factors and their RNA-binding sites"],"prefix":"10.1093","volume":"41","author":[{"given":"Matteo","family":"Giulietti","sequence":"first","affiliation":[]},{"given":"Francesco","family":"Piva","sequence":"additional","affiliation":[]},{"given":"Mattia","family":"D\u2019Antonio","sequence":"additional","affiliation":[]},{"given":"Paolo","family":"D\u2019Onorio De Meo","sequence":"additional","affiliation":[]},{"given":"Daniele","family":"Paoletti","sequence":"additional","affiliation":[]},{"given":"Tiziana","family":"Castrignan\u00f2","sequence":"additional","affiliation":[]},{"given":"Anna Maria","family":"D\u2019Erchia","sequence":"additional","affiliation":[]},{"given":"Ernesto","family":"Picardi","sequence":"additional","affiliation":[]},{"given":"Federico","family":"Zambelli","sequence":"additional","affiliation":[]},{"given":"Giovanni","family":"Principato","sequence":"additional","affiliation":[]},{"given":"Giulio","family":"Pavesi","sequence":"additional","affiliation":[]},{"given":"Graziano","family":"Pesole","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2012,10,30]]},"reference":[{"key":"key\n\t\t\t\t20171013043204_gks997-B1","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1016\/j.cell.2010.11.056","article-title":"Epigenetics in alternative pre-mRNA splicing","volume":"144","author":"Luco","year":"2011","journal-title":"Cell"},{"key":"key\n\t\t\t\t20171013043204_gks997-B2","doi-asserted-by":"crossref","first-page":"701","DOI":"10.1016\/j.cell.2009.02.009","article-title":"The spliceosome: design principles of a dynamic RNP machine","volume":"136","author":"Wahl","year":"2009","journal-title":"Cell"},{"key":"key\n\t\t\t\t20171013043204_gks997-B3","doi-asserted-by":"crossref","first-page":"802","DOI":"10.1261\/rna.876308","article-title":"Splicing regulation: from a parts list of regulatory elements to an integrated splicing code","volume":"14","author":"Wang","year":"2008","journal-title":"RNA"},{"key":"key\n\t\t\t\t20171013043204_gks997-B4","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1146\/annurev.biochem.72.121801.161720","article-title":"Mechanisms of alternative pre-messenger RNA splicing","volume":"72","author":"Black","year":"2003","journal-title":"Annu. Rev. Biochem."},{"key":"key\n\t\t\t\t20171013043204_gks997-B5","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1038\/nrm1645","article-title":"Understanding alternative splicing: towards a cellular code","volume":"6","author":"Matlin","year":"2005","journal-title":"Nat. Rev. Mol. Cell. Biol."},{"key":"key\n\t\t\t\t20171013043204_gks997-B6","doi-asserted-by":"crossref","first-page":"457","DOI":"10.1038\/nature08909","article-title":"Expansion of the eukaryotic proteome by alternative splicing","volume":"463","author":"Nilsen","year":"2010","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013043204_gks997-B7","doi-asserted-by":"crossref","first-page":"D767","DOI":"10.1093\/nar\/gkn892","article-title":"Human protein reference database\u20132009 update","volume":"37","author":"Keshava Prasad","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B8","doi-asserted-by":"crossref","first-page":"470","DOI":"10.1038\/nature07509","article-title":"Alternative isoform regulation in human tissue transcriptomes","volume":"456","author":"Wang","year":"2008","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013043204_gks997-B9","doi-asserted-by":"crossref","first-page":"3568","DOI":"10.1093\/nar\/gkg616","article-title":"ESEfinder: a web resource to identify exonic splicing enhancers","volume":"31","author":"Cartegni","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B10","doi-asserted-by":"crossref","first-page":"W429","DOI":"10.1093\/nar\/gkl333","article-title":"RegRNA: an integrated web server for identifying regulatory RNA motifs and elements","volume":"34","author":"Huang","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B11","doi-asserted-by":"crossref","first-page":"W281","DOI":"10.1093\/nar\/gkq444","article-title":"SFmap: a web server for motif analysis and prediction of splicing factor binding sites","volume":"38","author":"Paz","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B12","doi-asserted-by":"crossref","first-page":"D46","DOI":"10.1093\/nar\/gkj031","article-title":"ASD: a bioinformatics resource on alternative splicing","volume":"34","author":"Stamm","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B13","doi-asserted-by":"crossref","first-page":"606","DOI":"10.1093\/nar\/gkl1087","article-title":"Reduced splicing efficiency induced by synonymous substitutions may generate a substrate for natural selection of new splicing isoforms: the case of CFTR exon 12","volume":"35","author":"Raponi","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B14","doi-asserted-by":"crossref","first-page":"1211","DOI":"10.1093\/bioinformatics\/btp124","article-title":"SpliceAid: a database of experimental RNA target motifs bound by splicing proteins in humans","volume":"25","author":"Piva","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013043204_gks997-B15","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1002\/humu.21609","article-title":"SpliceAid 2: a database of human splicing factors expression data and RNA target motifs","volume":"33","author":"Piva","year":"2012","journal-title":"Hum. Mutat."},{"key":"key\n\t\t\t\t20171013043204_gks997-B16","doi-asserted-by":"crossref","first-page":"D841","DOI":"10.1093\/nar\/gkr1088","article-title":"The IntAct molecular interaction database in 2012","volume":"40","author":"Kerrien","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B17","doi-asserted-by":"crossref","first-page":"D876","DOI":"10.1093\/nar\/gkr1011","article-title":"STITCH 3: zooming in on protein-chemical interactions","volume":"40","author":"Kuhn","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B18","doi-asserted-by":"crossref","first-page":"D449","DOI":"10.1093\/nar\/gkh086","article-title":"The Database of Interacting Proteins: 2004 update","volume":"32","author":"Salwinski","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20171013043204_gks997-B19","doi-asserted-by":"crossref","first-page":"D857","DOI":"10.1093\/nar\/gkr930","article-title":"MINT, the molecular interaction database: 2012 update","volume":"40","author":"Licata","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B20","doi-asserted-by":"crossref","first-page":"D698","DOI":"10.1093\/nar\/gkq1116","article-title":"The BioGRID interaction database: 2011 update","volume":"39","author":"Stark","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B21","doi-asserted-by":"crossref","first-page":"D549","DOI":"10.1093\/nar\/gkr1049","article-title":"ProtChemSI: a network of protein-chemical structural interactions","volume":"40","author":"Kalinina","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B22","doi-asserted-by":"crossref","first-page":"1364","DOI":"10.1016\/j.str.2010.06.018","article-title":"Structural insights into RNA recognition by the alternate-splicing regulator CUG-binding protein 1","volume":"18","author":"Teplova","year":"2010","journal-title":"Structure"},{"key":"key\n\t\t\t\t20171013043204_gks997-B23","doi-asserted-by":"crossref","first-page":"1090","DOI":"10.1016\/j.str.2007.06.022","article-title":"Fragile X mental retardation syndrome: structure of the KH1-KH2 domains of fragile X mental retardation protein","volume":"15","author":"Valverde","year":"2007","journal-title":"Structure"},{"key":"key\n\t\t\t\t20171013043204_gks997-B24","doi-asserted-by":"crossref","first-page":"1737","DOI":"10.1038\/sj.emboj.7601631","article-title":"Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes","volume":"26","author":"Behzadnia","year":"2007","journal-title":"EMBO J."},{"key":"key\n\t\t\t\t20171013043204_gks997-B25","doi-asserted-by":"crossref","first-page":"38823","DOI":"10.1074\/jbc.M508183200","article-title":"Crystal structure of the first KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.7 A","volume":"280","author":"Du","year":"2005","journal-title":"J. Biol. Chem."},{"key":"key\n\t\t\t\t20171013043204_gks997-B26","doi-asserted-by":"crossref","first-page":"1043","DOI":"10.1261\/rna.410107","article-title":"X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2","volume":"13","author":"Du","year":"2007","journal-title":"RNA"},{"key":"key\n\t\t\t\t20171013043204_gks997-B27","doi-asserted-by":"crossref","first-page":"1266","DOI":"10.1073\/pnas.0508048103","article-title":"Crystal structure of a core spliceosomal protein interface","volume":"103","author":"Schellenberg","year":"2006","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20171013043204_gks997-B28","doi-asserted-by":"crossref","first-page":"389","DOI":"10.1016\/j.cell.2009.04.042","article-title":"Defining the human deubiquitinating enzyme interaction landscape","volume":"138","author":"Sowa","year":"2009","journal-title":"Cell"},{"key":"key\n\t\t\t\t20171013043204_gks997-B29","doi-asserted-by":"crossref","first-page":"381","DOI":"10.1101\/gr.082503.108","article-title":"Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts","volume":"19","author":"Sanford","year":"2009","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B30","doi-asserted-by":"crossref","first-page":"1300","DOI":"10.1093\/bioinformatics\/btn113","article-title":"ASPicDB: a database resource for alternative splicing analysis","volume":"24","author":"Castrignano","year":"2008","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013043204_gks997-B31","doi-asserted-by":"crossref","first-page":"D80","DOI":"10.1093\/nar\/gkq1073","article-title":"ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing","volume":"39","author":"Martelli","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013043204_gks997-B32","article-title":"Identification of SNPs in the cystic fibrosis interactome influencing pulmonary progression in cystic fibrosis","author":"Gisler","year":"2012","journal-title":"Eur. J. Hum. Genet"},{"key":"key\n\t\t\t\t20171013043204_gks997-B33","doi-asserted-by":"crossref","first-page":"e37255","DOI":"10.1371\/journal.pone.0037255","article-title":"Evolutionary constraint helps unmask a splicing regulatory region in BRCA1 exon 11","volume":"7","author":"Raponi","year":"2012","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20171013043204_gks997-B34","doi-asserted-by":"crossref","first-page":"D301","DOI":"10.1093\/nar\/gkq1069","article-title":"RBPDB: a database of RNA-binding specificities","volume":"39","author":"Cook","year":"2011","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/41\/D1\/D125\/18789484\/gks997.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:40:45Z","timestamp":1522680045000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/41\/D1\/D125\/1075782\/SpliceAidF-a-database-of-human-splicing-factors"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,10,30]]},"references-count":34,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2012,10,30]]},"published-print":{"date-parts":[[2013,1,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gks997","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2013,1,1]]},"published":{"date-parts":[[2012,10,30]]}}}