{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,20]],"date-time":"2026-05-20T04:02:57Z","timestamp":1779249777417,"version":"3.51.4"},"reference-count":70,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":1038,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Nucl. Acids Res."],"published-print":{"date-parts":[[2014,1]]},"DOI":"10.1093\/nar\/gkt1253","type":"journal-article","created":{"date-parts":[[2013,12,3]],"date-time":"2013-12-03T02:23:13Z","timestamp":1386037393000},"page":"D231-D239","source":"Crossref","is-referenced-by-count":584,"title":["eggNOG v4.0: nested orthology inference across 3686 organisms"],"prefix":"10.1093","volume":"42","author":[{"given":"Sean","family":"Powell","sequence":"first","affiliation":[]},{"given":"Kristoffer","family":"Forslund","sequence":"additional","affiliation":[]},{"given":"Damian","family":"Szklarczyk","sequence":"additional","affiliation":[]},{"given":"Kalliopi","family":"Trachana","sequence":"additional","affiliation":[]},{"given":"Alexander","family":"Roth","sequence":"additional","affiliation":[]},{"given":"Jaime","family":"Huerta-Cepas","sequence":"additional","affiliation":[]},{"given":"Toni","family":"Gabald\u00f3n","sequence":"additional","affiliation":[]},{"given":"Thomas","family":"Rattei","sequence":"additional","affiliation":[]},{"given":"Chris","family":"Creevey","sequence":"additional","affiliation":[]},{"given":"Michael","family":"Kuhn","sequence":"additional","affiliation":[]},{"given":"Lars J.","family":"Jensen","sequence":"additional","affiliation":[]},{"given":"Christian","family":"von Mering","sequence":"additional","affiliation":[]},{"given":"Peer","family":"Bork","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2013,12,1]]},"reference":[{"key":"2016013007421698000_42.D1.D231.1","doi-asserted-by":"publisher","DOI":"10.2307\/2412448"},{"key":"2016013007421698000_42.D1.D231.2","doi-asserted-by":"publisher","DOI":"10.1126\/science.278.5338.631"},{"key":"2016013007421698000_42.D1.D231.3","doi-asserted-by":"publisher","DOI":"10.1038\/nrg3456"},{"key":"2016013007421698000_42.D1.D231.4","doi-asserted-by":"publisher","DOI":"10.1016\/S0092-8674(00)80867-3"},{"key":"2016013007421698000_42.D1.D231.5","doi-asserted-by":"publisher","DOI":"10.1111\/j.1742-4658.2005.04917.x"},{"key":"2016013007421698000_42.D1.D231.6","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0056925"},{"key":"2016013007421698000_42.D1.D231.7","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkp951"},{"key":"2016013007421698000_42.D1.D231.8","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkm796"},{"key":"2016013007421698000_42.D1.D231.9","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2010-11-2-r16"},{"key":"2016013007421698000_42.D1.D231.10","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbr034"},{"key":"2016013007421698000_42.D1.D231.11","doi-asserted-by":"publisher","DOI":"10.1002\/bies.201100062"},{"key":"2016013007421698000_42.D1.D231.12","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2006-7-4-r31"},{"key":"2016013007421698000_42.D1.D231.13","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0000383"},{"key":"2016013007421698000_42.D1.D231.14","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000262"},{"key":"2016013007421698000_42.D1.D231.15","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0018755"},{"key":"2016013007421698000_42.D1.D231.16","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-4-41"},{"key":"2016013007421698000_42.D1.D231.17","doi-asserted-by":"publisher","DOI":"10.1186\/1745-6150-2-33"},{"key":"2016013007421698000_42.D1.D231.18","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks1239"},{"key":"2016013007421698000_42.D1.D231.19","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.1527"},{"key":"2016013007421698000_42.D1.D231.20","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq973"},{"key":"2016013007421698000_42.D1.D231.21","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr1060"},{"key":"2016013007421698000_42.D1.D231.22","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkl842"},{"key":"2016013007421698000_42.D1.D231.23","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr991"},{"key":"2016013007421698000_42.D1.D231.24","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks1068"},{"key":"2016013007421698000_42.D1.D231.25","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkn631"},{"key":"2016013007421698000_42.D1.D231.26","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr1090"},{"key":"2016013007421698000_42.D1.D231.27","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-11-461"},{"key":"2016013007421698000_42.D1.D231.28","doi-asserted-by":"publisher","DOI":"10.1126\/science.1123061"},{"key":"2016013007421698000_42.D1.D231.29","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2575"},{"key":"2016013007421698000_42.D1.D231.30","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2693"},{"key":"2016013007421698000_42.D1.D231.31","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2148-10-61"},{"key":"2016013007421698000_42.D1.D231.32","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkm763"},{"key":"2016013007421698000_42.D1.D231.33","doi-asserted-by":"publisher","DOI":"10.1104\/pp.111.189514"},{"key":"2016013007421698000_42.D1.D231.34","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr1079"},{"key":"2016013007421698000_42.D1.D231.35","doi-asserted-by":"publisher","DOI":"10.1038\/nature11711"},{"key":"2016013007421698000_42.D1.D231.36","doi-asserted-by":"publisher","DOI":"10.1126\/science.1147112"},{"key":"2016013007421698000_42.D1.D231.37","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkp949"},{"key":"2016013007421698000_42.D1.D231.38","doi-asserted-by":"publisher","DOI":"10.1016\/0076-6879(90)83007-V"},{"key":"2016013007421698000_42.D1.D231.39","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.1990.9999"},{"key":"2016013007421698000_42.D1.D231.40","doi-asserted-by":"publisher","DOI":"10.1006\/geno.1996.0614"},{"key":"2016013007421698000_42.D1.D231.41","doi-asserted-by":"publisher","DOI":"10.1016\/S0076-6879(96)66035-2"},{"key":"2016013007421698000_42.D1.D231.42","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp446"},{"key":"2016013007421698000_42.D1.D231.43","doi-asserted-by":"publisher","DOI":"10.1111\/j.1742-4658.2005.04945.x"},{"key":"2016013007421698000_42.D1.D231.44","doi-asserted-by":"publisher","DOI":"10.1186\/1745-6150-7-46"},{"key":"2016013007421698000_42.D1.D231.45","doi-asserted-by":"crossref","unstructured":"Tanabe M Kanehisa M . Curr. Protoc. Bioinformatics. 2012. Using the KEGG database resource. Chapter 1, Unit1.12.","DOI":"10.1002\/0471250953.bi0112s38"},{"key":"2016013007421698000_42.D1.D231.46","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr931"},{"key":"2016013007421698000_42.D1.D231.47","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr1065"},{"key":"2016013007421698000_42.D1.D231.48","doi-asserted-by":"publisher","DOI":"10.1038\/75556"},{"key":"2016013007421698000_42.D1.D231.49","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.genet.39.073003.114725"},{"key":"2016013007421698000_42.D1.D231.50","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.1995.2.9"},{"key":"2016013007421698000_42.D1.D231.51","doi-asserted-by":"publisher","DOI":"10.1142\/9781848165632_0019"},{"key":"2016013007421698000_42.D1.D231.52","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1002195"},{"key":"2016013007421698000_42.D1.D231.53","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkn723"},{"key":"2016013007421698000_42.D1.D231.54","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkn741"},{"key":"2016013007421698000_42.D1.D231.55","doi-asserted-by":"publisher","DOI":"10.1016\/S0959-437X(99)00029-5"},{"key":"2016013007421698000_42.D1.D231.56","doi-asserted-by":"publisher","DOI":"10.1038\/nrg1603"},{"key":"2016013007421698000_42.D1.D231.57","doi-asserted-by":"publisher","DOI":"10.1098\/rspb.2004.2864"},{"key":"2016013007421698000_42.D1.D231.58","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btm071"},{"key":"2016013007421698000_42.D1.D231.59","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq1238"},{"key":"2016013007421698000_42.D1.D231.60","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1002269"},{"key":"2016013007421698000_42.D1.D231.61","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq1109"},{"key":"2016013007421698000_42.D1.D231.62","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/mst010"},{"key":"2016013007421698000_42.D1.D231.63","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-5-113"},{"key":"2016013007421698000_42.D1.D231.64","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkl091"},{"key":"2016013007421698000_42.D1.D231.65","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp348"},{"key":"2016013007421698000_42.D1.D231.66","doi-asserted-by":"publisher","DOI":"10.1038\/msb.2011.75"},{"key":"2016013007421698000_42.D1.D231.67","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp033"},{"key":"2016013007421698000_42.D1.D231.68","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr201"},{"key":"2016013007421698000_42.D1.D231.69","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbr025"},{"key":"2016013007421698000_42.D1.D231.70","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.06813-11"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/42\/D1\/D231\/16952895\/gkt1253.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,8,4]],"date-time":"2019-08-04T10:33:17Z","timestamp":1564914797000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkt1253"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,12,1]]},"references-count":70,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2013,12,28]]},"published-print":{"date-parts":[[2014,1]]}},"alternative-id":["10.1093\/nar\/gkt1253"],"URL":"https:\/\/doi.org\/10.1093\/nar\/gkt1253","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,12,1]]}}}