{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,30]],"date-time":"2025-12-30T08:53:59Z","timestamp":1767084839956},"reference-count":26,"publisher":"Oxford University Press (OUP)","issue":"W1","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":1258,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,7,1]]},"DOI":"10.1093\/nar\/gkt294","type":"journal-article","created":{"date-parts":[[2013,4,26]],"date-time":"2013-04-26T01:19:26Z","timestamp":1366939166000},"page":"W368-W372","source":"Crossref","is-referenced-by-count":103,"title":["The ModFOLD4 server for the quality assessment of 3D protein models"],"prefix":"10.1093","volume":"41","author":[{"given":"Liam J.","family":"McGuffin","sequence":"first","affiliation":[]},{"given":"Maria T.","family":"Buenavista","sequence":"additional","affiliation":[]},{"given":"Daniel B.","family":"Roche","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2013,4,25]]},"reference":[{"key":"key\n\t\t\t\t20171013132313_gkt294-B1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20171013132313_gkt294-B2","doi-asserted-by":"crossref","first-page":"272","DOI":"10.1038\/381272a0","article-title":"Errors in protein structures","volume":"381","author":"Hooft","year":"1996","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B3","doi-asserted-by":"crossref","first-page":"477","DOI":"10.1007\/BF00228148","article-title":"AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR","volume":"8","author":"Laskowski","year":"1996","journal-title":"J. Biomol. NMR"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B4","doi-asserted-by":"crossref","first-page":"437","DOI":"10.1002\/prot.10286","article-title":"Structure validation by Calpha geometry: phi, psi and Cbeta deviation","volume":"50","author":"Lovell","year":"2003","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B5","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1002\/prot.340170404","article-title":"Recognition of errors in three-dimensional structures of proteins","volume":"17","author":"Sippl","year":"1993","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B6","doi-asserted-by":"crossref","first-page":"2714","DOI":"10.1110\/ps.0217002","article-title":"Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction","volume":"11","author":"Zhou","year":"2002","journal-title":"Protein Sci."},{"key":"key\n\t\t\t\t20171013132313_gkt294-B7","doi-asserted-by":"crossref","first-page":"396","DOI":"10.1016\/S0076-6879(97)77022-8","article-title":"VERIFY3D: assessment of protein models with three-dimensional profiles","volume":"277","author":"Eisenberg","year":"1997","journal-title":"Methods Enzymol."},{"key":"key\n\t\t\t\t20171013132313_gkt294-B8","doi-asserted-by":"crossref","first-page":"1073","DOI":"10.1110\/ps.0236803","article-title":"Can correct protein models be identified?","volume":"12","author":"Wallner","year":"2003","journal-title":"Protein Sci."},{"key":"key\n\t\t\t\t20171013132313_gkt294-B9","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1002\/prot.21715","article-title":"QMEAN: a comprehensive scoring function for model quality assessment","volume":"71","author":"Benkert","year":"2008","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B10","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1186\/1471-2105-8-345","article-title":"Benchmarking consensus model quality assessment for protein fold recognition","volume":"8","author":"McGuffin","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B11","doi-asserted-by":"crossref","first-page":"1015","DOI":"10.1093\/bioinformatics\/btg124","article-title":"3D-Jury: a simple approach to improve protein structure predictions","volume":"19","author":"Ginalski","year":"2003","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B12","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1002\/prot.22487","article-title":"Prediction of global and local quality of CASP8 models by MULTICOM series","volume":"77","author":"Cheng","year":"2009","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B13","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1002\/prot.22476","article-title":"Assessment of global and local model quality in CASP8 using Pcons and ProQ","volume":"77","author":"Larsson","year":"2009","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B14","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1002\/prot.22532","article-title":"Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust","volume":"77","author":"Benkert","year":"2009","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B15","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1002\/prot.22491","article-title":"Prediction of global and local model quality in CASP8 using the ModFOLD server","volume":"77","author":"McGuffin","year":"2009","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B16","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1002\/prot.22534","article-title":"Evaluation of CASP8 model quality predictions","volume":"77","author":"Cozzetto","year":"2009","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B17","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1002\/prot.23180","article-title":"Evaluation of model quality predictions in CASP9","volume":"79","author":"Kryshtafovych","year":"2011","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B18","doi-asserted-by":"crossref","first-page":"1851","DOI":"10.1093\/bioinformatics\/bts292","article-title":"Improvement of 3D protein models using multiple templates guided by single-template model quality assessment","volume":"28","author":"Buenavista","year":"2012","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B19","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1002\/prot.23120","article-title":"Automated tertiary structure prediction with accurate local model quality assessment using the IntFOLD-TS method","volume":"79","author":"McGuffin","year":"2011","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B20","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1093\/bioinformatics\/btp629","article-title":"Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments","volume":"26","author":"McGuffin","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B21","doi-asserted-by":"crossref","first-page":"702","DOI":"10.1002\/prot.20264","article-title":"Scoring function for automated assessment of protein structure template quality","volume":"57","author":"Zhang","year":"2004","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B22","doi-asserted-by":"crossref","first-page":"D196","DOI":"10.1093\/nar\/gkh043","article-title":"The genomic threading database: a comprehensive resource for structural annotations of the genomes from key organisms","volume":"32","author":"McGuffin","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013132313_gkt294-B23","doi-asserted-by":"crossref","first-page":"288","DOI":"10.1186\/1471-2105-7-288","article-title":"High throughput profile-profile based fold recognition for the entire human proteome","volume":"7","author":"McGuffin","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B24","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1093\/bioinformatics\/btq066","article-title":"How significant is a protein structure similarity with TM-score = 0.5?","volume":"26","author":"Xu","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B25","doi-asserted-by":"crossref","first-page":"586","DOI":"10.1093\/bioinformatics\/btn014","article-title":"The ModFOLD server for the quality assessment of protein structural models","volume":"24","author":"McGuffin","year":"2008","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013132313_gkt294-B26","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s10969-008-9048-5","article-title":"The protein model portal","volume":"10","author":"Arnold","year":"2009","journal-title":"J. Struct. Funct. Genomics"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/41\/W1\/W368\/3820431\/gkt294.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:41:13Z","timestamp":1522680073000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/41\/W1\/W368\/1093579\/The-ModFOLD4-server-for-the-quality-assessment-of"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,4,25]]},"references-count":26,"journal-issue":{"issue":"W1","published-online":{"date-parts":[[2013,4,25]]},"published-print":{"date-parts":[[2013,7,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkt294","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published-other":{"date-parts":[[2013,7,1]]},"published":{"date-parts":[[2013,4,25]]}}}