{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,8]],"date-time":"2026-07-08T00:16:47Z","timestamp":1783469807785,"version":"3.55.0"},"reference-count":43,"publisher":"Oxford University Press (OUP)","issue":"W1","license":[{"start":{"date-parts":[[2016,10,4]],"date-time":"2016-10-04T00:00:00Z","timestamp":1475539200000},"content-version":"vor","delay-in-days":1210,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,7,1]]},"DOI":"10.1093\/nar\/gkt338","type":"journal-article","created":{"date-parts":[[2013,6,14]],"date-time":"2013-06-14T01:00:28Z","timestamp":1371171628000},"page":"W63-W70","source":"Crossref","is-referenced-by-count":142,"title":["INMEX\u2014a web-based tool for integrative meta-analysis of expression data"],"prefix":"10.1093","volume":"41","author":[{"given":"Jianguo","family":"Xia","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Christopher D.","family":"Fjell","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Matthew L.","family":"Mayer","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Olga M.","family":"Pena","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David S.","family":"Wishart","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert E. W.","family":"Hancock","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2013,6,12]]},"reference":[{"key":"key\n\t\t\t\t20171013120716_gkt338-B1","doi-asserted-by":"crossref","first-page":"D1005","DOI":"10.1093\/nar\/gkq1184","article-title":"NCBI GEO: archive for functional genomics data sets-10 years on","volume":"39","author":"Barrett","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B2","doi-asserted-by":"crossref","first-page":"D987","DOI":"10.1093\/nar\/gks1174","article-title":"ArrayExpress update\u2014trends in database growth and links to data analysis tools","volume":"41","author":"Rustici","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B3","doi-asserted-by":"crossref","first-page":"3785","DOI":"10.1093\/nar\/gkr1265","article-title":"Comprehensive literature review and statistical considerations for microarray meta-analysis","volume":"40","author":"Tseng","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B4","doi-asserted-by":"crossref","first-page":"i84","DOI":"10.1093\/bioinformatics\/btg1010","article-title":"Combining multiple microarray studies and modeling interstudy variation","volume":"19","author":"Choi","year":"2003","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B5","doi-asserted-by":"crossref","first-page":"e184","DOI":"10.1371\/journal.pmed.0050184","article-title":"Key issues in conducting a meta-analysis of gene expression microarray datasets","volume":"5","author":"Ramasamy","year":"2008","journal-title":"PLoS Med."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B6","first-page":"4427","article-title":"Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer","volume":"62","author":"Rhodes","year":"2002","journal-title":"Cancer Res."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B7","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1093\/bioinformatics\/btg385","article-title":"Adjustment of systematic microarray data biases","volume":"20","author":"Benito","year":"2004","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B8","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1016\/j.febslet.2004.07.055","article-title":"Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments","volume":"573","author":"Breitling","year":"2004","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B9","doi-asserted-by":"crossref","first-page":"ii137","DOI":"10.1093\/bioinformatics\/bti1123","article-title":"Fusing microarray experiments with multivariate regression","volume":"21","author":"Gilks","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B10","doi-asserted-by":"crossref","first-page":"2272","DOI":"10.1093\/bioinformatics\/bts430","article-title":"Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data","volume":"28","author":"Zoubarev","year":"2012","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B11","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1186\/1471-2105-11-421","article-title":"Microarray meta-analysis database (M(2)DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database","volume":"11","author":"Cheng","year":"2010","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B12","doi-asserted-by":"crossref","first-page":"2692","DOI":"10.1093\/bioinformatics\/btp444","article-title":"Moderated effect size and P-value combinations for microarray meta-analyses","volume":"25","author":"Marot","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B13","doi-asserted-by":"crossref","first-page":"420747","DOI":"10.1155\/2008\/420747","article-title":"Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes","volume":"2008","author":"Hruz","year":"2008","journal-title":"Adv. Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B14","doi-asserted-by":"crossref","first-page":"166","DOI":"10.1593\/neo.07112","article-title":"Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles","volume":"9","author":"Rhodes","year":"2007","journal-title":"Neoplasia"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B15","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1186\/1471-2105-10-201","article-title":"A-MADMAN: annotation-based microarray data meta-analysis tool","volume":"10","author":"Bisognin","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B16","doi-asserted-by":"crossref","first-page":"634","DOI":"10.2144\/04364ST04","article-title":"GeneX Va: VBC open source microarray database and analysis software","volume":"36","author":"Lee","year":"2004","journal-title":"Biotechniques"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B17","doi-asserted-by":"crossref","first-page":"2185","DOI":"10.1093\/bioinformatics\/btm297","article-title":"Web-based GeneChip analysis system for large-scale collaborative projects","volume":"23","author":"Dai","year":"2007","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B18","doi-asserted-by":"crossref","first-page":"160","DOI":"10.1515\/jib-2011-160","article-title":"MADMAX\u2014management and analysis database for multiple \u223comics experiments","volume":"8","author":"Lin","year":"2011","journal-title":"J. Integr. Bioinform."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B19","doi-asserted-by":"crossref","first-page":"2248","DOI":"10.1093\/bioinformatics\/btr351","article-title":"MGV: a generic graph viewer for comparative omics data","volume":"27","author":"Symons","year":"2011","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B20","doi-asserted-by":"crossref","first-page":"2917","DOI":"10.1093\/bioinformatics\/btr499","article-title":"Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA","volume":"27","author":"Kamburov","year":"2011","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B21","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1093\/bioinformatics\/btq594","article-title":"Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data","volume":"27","author":"Garcia-Alcalde","year":"2011","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B22","doi-asserted-by":"crossref","first-page":"2855","DOI":"10.1093\/bioinformatics\/btp515","article-title":"integrOmics: an R package to unravel relationships between two omics datasets","volume":"25","author":"Le Cao","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B23","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1093\/bioinformatics\/btr661","article-title":"Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data","volume":"28","author":"Karnovsky","year":"2012","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B24","doi-asserted-by":"crossref","first-page":"R139","DOI":"10.1186\/gb-2008-9-9-r139","article-title":"Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues","volume":"9","author":"Kilpinen","year":"2008","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B25","doi-asserted-by":"crossref","first-page":"bas055","DOI":"10.1093\/database\/bas055","article-title":"CancerMA: a web-based tool for automatic meta-analysis of public cancer microarray data","volume":"2012","author":"Feichtinger","year":"2012","journal-title":"Database"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B26","doi-asserted-by":"crossref","first-page":"2825","DOI":"10.1093\/bioinformatics\/btl476","article-title":"RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis","volume":"22","author":"Hong","year":"2006","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B27","article-title":"MAMA: meta-analysis of microarray","author":"Ihnatova","year":"2012"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B28","article-title":"metaMA: meta-analysis for microarrays","author":"Marot","year":"2011"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B29","article-title":"GeneMeta: metaanalysis for high throughput experiments","author":"Lusa","year":"2013"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B30","doi-asserted-by":"crossref","first-page":"2534","DOI":"10.1093\/bioinformatics\/bts485","article-title":"An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection","volume":"28","author":"Wang","year":"2012","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B31","doi-asserted-by":"crossref","first-page":"W652","DOI":"10.1093\/nar\/gkp356","article-title":"MetaboAnalyst: a web server for metabolomic data analysis and interpretation","volume":"37","author":"Xia","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B32","doi-asserted-by":"crossref","first-page":"W127","DOI":"10.1093\/nar\/gks374","article-title":"MetaboAnalyst 2.0\u2014a comprehensive server for metabolomic data analysis","volume":"40","author":"Xia","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B33","doi-asserted-by":"crossref","first-page":"W308","DOI":"10.1093\/nar\/gkn303","article-title":"GEPAS, a web-based tool for microarray data analysis and interpretation","volume":"36","author":"Tarraga","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B34","doi-asserted-by":"crossref","first-page":"W71","DOI":"10.1093\/nar\/gkq329","article-title":"MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data","volume":"38","author":"Xia","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B35","doi-asserted-by":"crossref","first-page":"D603","DOI":"10.1093\/nar\/gkn810","article-title":"HMDB: a knowledgebase for the human metabolome","volume":"37","author":"Wishart","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B36","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1093\/bioinformatics\/19.2.185","article-title":"A comparison of normalization methods for high density oligonucleotide array data based on variance and bias","volume":"19","author":"Bolstad","year":"2003","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B37","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1007\/0-387-29362-0_23","volume-title":"Bioinformatics and Computational Biology Solutions Using R and Bioconductor","author":"Smyth","year":"2005"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B38","doi-asserted-by":"crossref","first-page":"101","DOI":"10.2307\/3001666","article-title":"The combination of estimates from different experiments","volume":"10","author":"Cochran","year":"1954","journal-title":"Biometrics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B39","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1093\/bioinformatics\/btl567","article-title":"Using GOstats to test gene lists for GO term association","volume":"23","author":"Falcon","year":"2007","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B40","doi-asserted-by":"crossref","first-page":"D1228","DOI":"10.1093\/nar\/gks1147","article-title":"InnateDB: systems biology of innate immunity and beyond\u2014recent updates and continuing curation","volume":"41","author":"Breuer","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171013120716_gkt338-B41","article-title":"An R package for graph-based reconstruction and analyses of the KEGG pathways","author":"Li","year":"2012"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B42","doi-asserted-by":"crossref","first-page":"2342","DOI":"10.1093\/bioinformatics\/btq418","article-title":"MetPA: a web-based metabolomics tool for pathway analysis and visualization","volume":"26","author":"Xia","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171013120716_gkt338-B43","doi-asserted-by":"crossref","first-page":"e17","DOI":"10.1093\/nar\/gkp942","article-title":"A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data","volume":"38","author":"Barbosa-Morais","year":"2010","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/41\/W1\/W63\/3826183\/gkt338.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,7,15]],"date-time":"2019-07-15T10:36:29Z","timestamp":1563186989000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/41\/W1\/W63\/1095270\/INMEXa-webbased-tool-for-integrative-metaanalysis"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,6,12]]},"references-count":43,"journal-issue":{"issue":"W1","published-online":{"date-parts":[[2013,6,12]]},"published-print":{"date-parts":[[2013,7,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkt338","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published-other":{"date-parts":[[2013,7,1]]},"published":{"date-parts":[[2013,6,12]]}}}