{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,9]],"date-time":"2026-05-09T03:53:42Z","timestamp":1778298822884,"version":"3.51.4"},"reference-count":17,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2016,11,9]],"date-time":"2016-11-09T00:00:00Z","timestamp":1478649600000},"content-version":"vor","delay-in-days":734,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,1,28]]},"DOI":"10.1093\/nar\/gku1088","type":"journal-article","created":{"date-parts":[[2014,11,7]],"date-time":"2014-11-07T05:22:41Z","timestamp":1415337761000},"page":"D465-D469","source":"Crossref","is-referenced-by-count":98,"title":["Recent improvements to Binding MOAD: a resource for protein\u2013ligand binding affinities and structures"],"prefix":"10.1093","volume":"43","author":[{"given":"Aqeel","family":"Ahmed","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Richard D.","family":"Smith","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jordan J.","family":"Clark","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"suffix":"Jr","given":"James B.","family":"Dunbar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Heather A.","family":"Carlson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2014,11,6]]},"reference":[{"key":"key\n\t\t\t\t20171011193558_B1","doi-asserted-by":"crossref","first-page":"D475","DOI":"10.1093\/nar\/gks1200","article-title":"The RCSB Protein Data Bank: new resources for research and education","volume":"41","author":"Rose","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011193558_B2","doi-asserted-by":"crossref","first-page":"333","DOI":"10.1002\/prot.20512","article-title":"Binding MOAD (Mother Of All Databases)","volume":"60","author":"Hu","year":"2005","journal-title":"Proteins Struct. Funct. Bioinform."},{"key":"key\n\t\t\t\t20171011193558_B3","doi-asserted-by":"crossref","first-page":"D674","DOI":"10.1093\/nar\/gkm911","article-title":"Binding MOAD, a\u00a0high-quality protein\u2013ligand database","volume":"36","author":"Benson","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011193558_B4","doi-asserted-by":"crossref","first-page":"1700","DOI":"10.1021\/ci500080q","article-title":"Comparative assessment of scoring functions on an updated benchmark: 1. Compilation of the test set","volume":"54","author":"Li","year":"2014","journal-title":"J. Chem. Inf. Model."},{"key":"key\n\t\t\t\t20171011193558_B5","doi-asserted-by":"crossref","first-page":"2287","DOI":"10.1021\/ci300184x","article-title":"Comparison and druggability prediction of protein\u2013ligand binding sites from pharmacophore-annotated cavity shapes","volume":"52","author":"Desaphy","year":"2012","journal-title":"J. Chem. Inf. Model."},{"key":"key\n\t\t\t\t20171011193558_B6","doi-asserted-by":"crossref","first-page":"D535","DOI":"10.1093\/nar\/gkr825","article-title":"Pocketome: an encyclopedia of small-molecule binding sites in 4D","volume":"40","author":"Kufareva","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011193558_B7","doi-asserted-by":"crossref","first-page":"607","DOI":"10.1016\/S0022-2836(02)01408-0","article-title":"Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions","volume":"326","author":"Hendlich","year":"2003","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20171011193558_B8","doi-asserted-by":"crossref","first-page":"D198","DOI":"10.1093\/nar\/gkl999","article-title":"BindingDB: a web-accessible database of experimentally determined protein\u2013ligand binding affinities","volume":"35","author":"Liu","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011193558_B9","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1002\/prot.20288","article-title":"MSDsite: a database search and retrieval system for the analysis and viewing of bound ligands and active sites","volume":"58","author":"Golovin","year":"2005","journal-title":"Proteins Struct. Funct. Bioinform."},{"key":"key\n\t\t\t\t20171011193558_B10","doi-asserted-by":"crossref","first-page":"122","DOI":"10.1186\/1471-2105-6-122","article-title":"SuperLigands\u2014a database of ligand structures derived from the Protein Data Bank","volume":"6","author":"Michalsky","year":"2005","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20171011193558_B11","doi-asserted-by":"crossref","first-page":"1856","DOI":"10.1093\/bioinformatics\/btg243","article-title":"Protein Ligand Database (PLD): additional understanding of the nature and specificity of protein\u2013ligand complexes","volume":"19","author":"Puvanendrampillai","year":"2003","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011193558_B12","doi-asserted-by":"crossref","first-page":"414","DOI":"10.1016\/j.jmgm.2005.08.002","article-title":"Exploring protein-ligand recognition with Binding MOAD","volume":"24","author":"Smith","year":"2006","journal-title":"J. Mol. Graph. Model."},{"key":"key\n\t\t\t\t20171011193558_B13","doi-asserted-by":"crossref","first-page":"6432","DOI":"10.1021\/jm8006504","article-title":"Differences between high- and low-affinity complexes of enzymes and non-enzymes","volume":"51","author":"Carlson","year":"2008","journal-title":"J. Med. Chem."},{"key":"key\n\t\t\t\t20171011193558_B14","doi-asserted-by":"crossref","first-page":"2410","DOI":"10.1021\/ci300196g","article-title":"Structural insights into the molecular basis of the ligand promiscuity","volume":"52","author":"Sturm","year":"2012","journal-title":"J. Chem. Inf. Model."},{"key":"key\n\t\t\t\t20171011193558_B15","doi-asserted-by":"crossref","first-page":"e32171","DOI":"10.1371\/journal.pone.0032171","article-title":"Text mining improves prediction of protein functional sites","volume":"7","author":"Verspoor","year":"2012","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20171011193558_B16","doi-asserted-by":"crossref","first-page":"e1003321","DOI":"10.1371\/journal.pcbi.1003321","article-title":"Exploring the composition of protein-ligand binding sites on a large scale","volume":"9","author":"Khazanov","year":"2013","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20171011193558_B17","doi-asserted-by":"crossref","first-page":"2036","DOI":"10.1021\/ci200082t","article-title":"CSAR benchmark exercise of 2010: selection of the protein-ligand complexes","volume":"51","author":"Dunbar","year":"2011","journal-title":"J. Chem. Inf. Model."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/43\/D1\/D465\/7317583\/gku1088.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:41:46Z","timestamp":1522680106000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/43\/D1\/D465\/2437418\/Recent-improvements-to-Binding-MOAD-a-resource-for"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,11,6]]},"references-count":17,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2014,11,6]]},"published-print":{"date-parts":[[2015,1,28]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gku1088","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published-other":{"date-parts":[[2015,1,28]]},"published":{"date-parts":[[2014,11,6]]}}}