{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,1]],"date-time":"2026-05-01T00:58:19Z","timestamp":1777597099438,"version":"3.51.4"},"reference-count":35,"publisher":"Oxford University Press (OUP)","issue":"D1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,1,28]]},"DOI":"10.1093\/nar\/gku1126","type":"journal-article","created":{"date-parts":[[2014,11,7]],"date-time":"2014-11-07T05:22:41Z","timestamp":1415337761000},"page":"D566-D570","source":"Crossref","is-referenced-by-count":92,"title":["HIV-1, human interaction database: current status and new features"],"prefix":"10.1093","volume":"43","author":[{"given":"Danso","family":"Ako-Adjei","sequence":"first","affiliation":[]},{"given":"William","family":"Fu","sequence":"additional","affiliation":[]},{"given":"Craig","family":"Wallin","sequence":"additional","affiliation":[]},{"given":"Kenneth S.","family":"Katz","sequence":"additional","affiliation":[]},{"given":"Guangfeng","family":"Song","sequence":"additional","affiliation":[]},{"given":"Dakshesh","family":"Darji","sequence":"additional","affiliation":[]},{"given":"J. Rodney","family":"Brister","sequence":"additional","affiliation":[]},{"given":"Roger G.","family":"Ptak","sequence":"additional","affiliation":[]},{"given":"Kim D.","family":"Pruitt","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2014,11,6]]},"reference":[{"key":"key\n\t\t\t\t20171011195357_B1","doi-asserted-by":"crossref","first-page":"868","DOI":"10.1126\/science.6189183","article-title":"Isolation of a T-lymphotropic retrovirus from a patient at risk for acquired immune deficiency syndrome (AIDS)","volume":"220","author":"Barre-Sinoussi","year":"1983","journal-title":"Science"},{"key":"key\n\t\t\t\t20171011195357_B2","doi-asserted-by":"crossref","first-page":"500","DOI":"10.1126\/science.6200936","article-title":"Frequent detection and isolation of cytopathic retroviruses (HTLV-III) from patients with AIDS and at risk for AIDS","volume":"224","author":"Gallo","year":"1984","journal-title":"Science"},{"key":"key\n\t\t\t\t20171011195357_B3","doi-asserted-by":"crossref","first-page":"D417","DOI":"10.1093\/nar\/gkn708","article-title":"Human immunodeficiency virus type 1, human protein interaction database at NCBI","volume":"37","author":"Fu","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195357_B4","doi-asserted-by":"crossref","first-page":"1497","DOI":"10.1089\/aid.2008.0113","article-title":"Cataloguing the HIV type 1 human protein interaction network","volume":"24","author":"Ptak","year":"2008","journal-title":"AIDS Res. Hum. Retroviruses"},{"key":"key\n\t\t\t\t20171011195357_B5","doi-asserted-by":"crossref","first-page":"D8","DOI":"10.1093\/nar\/gks1189","article-title":"Database resources of the National Center for Biotechnology Information","volume":"41","author":"NCBI resource coordinators","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195357_B6","doi-asserted-by":"crossref","first-page":"3797","DOI":"10.1093\/bioinformatics\/bti607","article-title":"An automated genotyping system for analysis of HIV-1 and other microbial sequences","volume":"21","author":"de Oliveira","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011195357_B7","first-page":"doi:10.1093\/nar\/gku1055","article-title":"Gene: a gene-centered information resource atNCBI","author":"Brown","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195357_B8","doi-asserted-by":"crossref","first-page":"D258","DOI":"10.1093\/nar\/gkh036","article-title":"The Gene Ontology (GO) database and informatics resource","volume":"32","author":"Harris","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195357_B9","doi-asserted-by":"crossref","first-page":"2045","DOI":"10.1021\/pr300918r","article-title":"The conserved set of host proteins incorporated into HIV-1 virions suggests a common egress pathway in multiple cell types","volume":"12","author":"Linde","year":"2013","journal-title":"J. Proteome Res."},{"key":"key\n\t\t\t\t20171011195357_B10","doi-asserted-by":"crossref","first-page":"9283","DOI":"10.1128\/JVI.00814-09","article-title":"Dynamic host energetics and cytoskeletal proteomes in human immunodeficiency virus type 1-infected human primary CD4 cells: analysis by multiplexed label-free mass spectrometry","volume":"83","author":"Chan","year":"2009","journal-title":"J. Virol."},{"key":"key\n\t\t\t\t20171011195357_B11","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1016\/j.virol.2012.03.026","article-title":"Quantitative proteomic analysis of HIV-1 infected CD4+ T cells reveals an early host response in important biological pathways: protein synthesis, cell proliferation, and T-cell activation","volume":"429","author":"Navare","year":"2012","journal-title":"Virology"},{"key":"key\n\t\t\t\t20171011195357_B12","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1186\/1471-2148-10-186","article-title":"Positive selection of HIV host factors and the evolution of lentivirus genes","volume":"10","author":"Bozek","year":"2010","journal-title":"BMC Evol. Biol."},{"key":"key\n\t\t\t\t20171011195357_B13","doi-asserted-by":"crossref","first-page":"1836","DOI":"10.1086\/657322","article-title":"Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection","volume":"202","author":"Chinn","year":"2010","journal-title":"J. Infect. Dis."},{"issue":"Suppl. 1","key":"key\n\t\t\t\t20171011195357_B14","doi-asserted-by":"crossref","first-page":"S19","DOI":"10.1186\/1471-2105-12-S1-S19","article-title":"Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception","volume":"12","author":"Qian","year":"2011","journal-title":"BMC Bioinformat."},{"key":"key\n\t\t\t\t20171011195357_B15","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1186\/1471-2105-10-95","article-title":"JNets: exploring networks by integrating annotation","volume":"10","author":"Macpherson","year":"2009","journal-title":"BMC Bioinformat."},{"key":"key\n\t\t\t\t20171011195357_B16","doi-asserted-by":"crossref","first-page":"e20122","DOI":"10.1371\/journal.pone.0020122","article-title":"HIVToolbox, an integrated web application for investigating HIV","volume":"6","author":"Sargeant","year":"2011","journal-title":"PLoS ONE"},{"key":"key\n\t\t\t\t20171011195357_B17","doi-asserted-by":"crossref","first-page":"298","DOI":"10.1186\/1471-2105-12-298","article-title":"GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data","volume":"12","author":"Fahey","year":"2011","journal-title":"BMC Bioinformat."},{"key":"key\n\t\t\t\t20171011195357_B18","doi-asserted-by":"crossref","first-page":"i645","DOI":"10.1093\/bioinformatics\/btq394","article-title":"Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins","volume":"26","author":"Qi","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011195357_B19","doi-asserted-by":"crossref","first-page":"e17190","DOI":"10.1371\/journal.pone.0017190","article-title":"Genome-wide association study identifies single nucleotide polymorphism in DYRK1A associated with replication of HIV-1 in monocyte-derived macrophages","volume":"6","author":"Bol","year":"2011","journal-title":"PLoS ONE"},{"key":"key\n\t\t\t\t20171011195357_B20","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1186\/1471-2105-15-26","article-title":"Incorporating the type and direction information in predicting novel regulatory interactions between HIV-1 and human proteins using a biclustering approach","volume":"15","author":"Mukhopadhyay","year":"2014","journal-title":"BMC Bioinformat."},{"key":"key\n\t\t\t\t20171011195357_B21","doi-asserted-by":"crossref","first-page":"e1000437","DOI":"10.1371\/journal.ppat.1000437","article-title":"Host cell factors in HIV replication: meta-analysis of genome-wide studies","volume":"5","author":"Bushman","year":"2009","journal-title":"PLoS Pathog."},{"key":"key\n\t\t\t\t20171011195357_B22","doi-asserted-by":"crossref","first-page":"1491","DOI":"10.1093\/infdis\/jir046","article-title":"Genome-wide association study implicates PARD3B-based AIDS restriction","volume":"203","author":"Troyer","year":"2011","journal-title":"J. Infect. Dis."},{"key":"key\n\t\t\t\t20171011195357_B23","doi-asserted-by":"crossref","first-page":"361","DOI":"10.1186\/1743-422X-10-361","article-title":"Transcriptome analysis of primary monocytes from HIV-positive patients with differential responses to antiretroviral therapy","volume":"10","author":"Wu","year":"2013","journal-title":"Virol. J."},{"key":"key\n\t\t\t\t20171011195357_B24","doi-asserted-by":"crossref","first-page":"e65207","DOI":"10.1371\/journal.pone.0065207","article-title":"Identifying chemicals with potential therapy of HIV based on protein-protein and protein-chemical interaction network","volume":"8","author":"Li","year":"2013","journal-title":"PLoS ONE"},{"key":"key\n\t\t\t\t20171011195357_B25","doi-asserted-by":"crossref","first-page":"e53535","DOI":"10.1371\/journal.pone.0053535","article-title":"Identification of new protein interactions between dengue fever virus and its hosts, human and mosquito","volume":"8","author":"Mairiang","year":"2013","journal-title":"PLoS ONE"},{"key":"key\n\t\t\t\t20171011195357_B26","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1186\/1745-6150-9-5","article-title":"Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions","volume":"9","author":"Zhou","year":"2014","journal-title":"Biol. Direct"},{"key":"key\n\t\t\t\t20171011195357_B27","doi-asserted-by":"crossref","first-page":"986","DOI":"10.1093\/embo-reports\/kve230","article-title":"Non-coding RNAs: the architects of eukaryotic complexity","volume":"2","author":"Mattick","year":"2001","journal-title":"EMBO Rep."},{"key":"key\n\t\t\t\t20171011195357_B28","first-page":"800","article-title":"U1 snRNA associates with TFIIH and regulates transcriptional initiation","volume":"9","author":"Kwek","year":"2002","journal-title":"Nat. Struct. Biol."},{"key":"key\n\t\t\t\t20171011195357_B29","doi-asserted-by":"crossref","first-page":"775","DOI":"10.1016\/S0300-9084(02)01402-5","article-title":"The expanding snoRNA world","volume":"84","author":"Bachellerie","year":"2002","journal-title":"Biochimie"},{"key":"key\n\t\t\t\t20171011195357_B30","doi-asserted-by":"crossref","first-page":"351","DOI":"10.1146\/annurev-biochem-060308-103103","article-title":"Regulation of mRNA translation and stability by microRNAs","volume":"79","author":"Fabian","year":"2010","journal-title":"Annu. Rev. Biochem."},{"key":"key\n\t\t\t\t20171011195357_B31","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1016\/j.coviro.2013.04.001","article-title":"Non-coding RNAs: novel players in chromatin-regulation during viral latency","volume":"3","author":"Eilebrecht","year":"2013","journal-title":"Curr. Opin. Virol."},{"key":"key\n\t\t\t\t20171011195357_B32","doi-asserted-by":"crossref","first-page":"1633","DOI":"10.3390\/v5071633","article-title":"Chromatin, non-coding RNAs, and the expression of HIV","volume":"5","author":"Groen","year":"2013","journal-title":"Viruses"},{"key":"key\n\t\t\t\t20171011195357_B33","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1186\/1742-4690-2-81","article-title":"Changes in microRNA expression profiles in HIV-1-transfected human cells","volume":"2","author":"Yeung","year":"2005","journal-title":"Retrovirology"},{"key":"key\n\t\t\t\t20171011195357_B34","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1186\/1742-4690-5-118","article-title":"MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals","volume":"5","author":"Houzet","year":"2008","journal-title":"Retrovirology"},{"key":"key\n\t\t\t\t20171011195357_B35","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1038\/35104575","article-title":"The 7SK small nuclear RNA inhibits the CDK9\/cyclin T1 kinase to control transcription","volume":"414","author":"Yang","year":"2001","journal-title":"Nature"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/43\/D1\/D566\/17436616\/gku1126.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,10,11]],"date-time":"2017-10-11T23:54:04Z","timestamp":1507766044000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/43\/D1\/D566\/2438071\/HIV1-human-interaction-database-current-status-and"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,11,6]]},"references-count":35,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2014,11,6]]},"published-print":{"date-parts":[[2015,1,28]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gku1126","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published-other":{"date-parts":[[2015,1,28]]},"published":{"date-parts":[[2014,11,6]]}}}