{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T02:29:19Z","timestamp":1773282559605,"version":"3.50.1"},"reference-count":25,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2016,11,9]],"date-time":"2016-11-09T00:00:00Z","timestamp":1478649600000},"content-version":"vor","delay-in-days":719,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,1,28]]},"DOI":"10.1093\/nar\/gku1180","type":"journal-article","created":{"date-parts":[[2014,11,22]],"date-time":"2014-11-22T05:10:27Z","timestamp":1416633027000},"page":"D160-D167","source":"Crossref","is-referenced-by-count":119,"title":["DoRiNA 2.0\u2014upgrading the doRiNA database of RNA interactions in post-transcriptional regulation"],"prefix":"10.1093","volume":"43","author":[{"given":"Kai","family":"Blin","sequence":"first","affiliation":[]},{"given":"Christoph","family":"Dieterich","sequence":"additional","affiliation":[]},{"given":"Ricardo","family":"Wurmus","sequence":"additional","affiliation":[]},{"given":"Nikolaus","family":"Rajewsky","sequence":"additional","affiliation":[]},{"given":"Markus","family":"Landthaler","sequence":"additional","affiliation":[]},{"given":"Altuna","family":"Akalin","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2014,11,21]]},"reference":[{"key":"key\n\t\t\t\t20171011224511_B1","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1002\/wrna.1147","article-title":"Computational biology of RNA interactions","volume":"4","author":"Dieterich","year":"2013","journal-title":"Wiley Interdiscip. Rev. RNA"},{"key":"key\n\t\t\t\t20171011224511_B2","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1038\/nature12311","article-title":"A compendium of RNA-binding motifs for decoding gene regulation","volume":"499","author":"Ray","year":"2013","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171011224511_B3","doi-asserted-by":"crossref","first-page":"D180","DOI":"10.1093\/nar\/gkr1007","article-title":"doRiNA: a database of RNA interactions in post-transcriptional regulation","volume":"40","author":"Anders","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011224511_B4","doi-asserted-by":"crossref","first-page":"2928","DOI":"10.1093\/bioinformatics\/btt495","article-title":"catRAPID omics: a web server for large-scale prediction of protein-RNA interactions","volume":"29","author":"Agostini","year":"2013","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011224511_B5","doi-asserted-by":"crossref","first-page":"W361","DOI":"10.1093\/nar\/gku406","article-title":"RBPmap: a web server for mapping binding sites of RNA-binding proteins","volume":"42","author":"Paz","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011224511_B6","doi-asserted-by":"crossref","first-page":"266","DOI":"10.1002\/wrna.31","article-title":"HITS-CLIP: panoramic views of protein-RNA regulation in living cells","volume":"1","author":"Darnell","year":"2010","journal-title":"Wiley Interdiscip. Rev. RNA"},{"key":"key\n\t\t\t\t20171011224511_B7","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1016\/j.cell.2010.03.009","article-title":"Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP","volume":"141","author":"Hafner","year":"2010","journal-title":"Cell"},{"key":"key\n\t\t\t\t20171011224511_B8","doi-asserted-by":"crossref","first-page":"909","DOI":"10.1038\/nsmb.1838","article-title":"iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution","volume":"17","author":"Konig","year":"2010","journal-title":"Nat. Struct. Mol. Biol."},{"key":"key\n\t\t\t\t20171011224511_B9","doi-asserted-by":"crossref","first-page":"D991","DOI":"10.1093\/nar\/gks1193","article-title":"NCBI GEO: archive for functional genomics data sets\u2013update","volume":"41","author":"Barrett","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011224511_B10","doi-asserted-by":"crossref","first-page":"654","DOI":"10.1016\/j.cell.2013.03.043","article-title":"Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding","volume":"153","author":"Helwak","year":"2013","journal-title":"Cell"},{"key":"key\n\t\t\t\t20171011224511_B11","doi-asserted-by":"crossref","first-page":"1042","DOI":"10.1016\/j.molcel.2014.03.049","article-title":"Unambiguous identification of miRNA:target site interactions by different types of ligation reactions","volume":"54","author":"Grosswendt","year":"2014","journal-title":"Mol. Cell"},{"key":"key\n\t\t\t\t20171011224511_B12","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1101\/gr.082701.108","article-title":"Most mammalian mRNAs are conserved targets of microRNAs","volume":"19","author":"Friedman","year":"2009","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20171011224511_B13","doi-asserted-by":"crossref","first-page":"460","DOI":"10.1016\/j.cub.2006.01.050","article-title":"A genome-wide map of conserved microRNA targets in C. elegans","volume":"16","author":"Lall","year":"2006","journal-title":"Curr. Biol."},{"key":"key\n\t\t\t\t20171011224511_B14","doi-asserted-by":"crossref","first-page":"3423","DOI":"10.1093\/bioinformatics\/btr539","article-title":"Pybedtools: a flexible Python library for manipulating genomic datasets and annotations","volume":"27","author":"Dale","year":"2011","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011224511_B15","doi-asserted-by":"crossref","first-page":"841","DOI":"10.1093\/bioinformatics\/btq033","article-title":"BEDTools: a flexible suite of utilities for comparing genomic features","volume":"26","author":"Quinlan","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011224511_B16","doi-asserted-by":"crossref","first-page":"D764","DOI":"10.1093\/nar\/gkt1168","article-title":"The UCSC Genome Browser database: 2014 update","volume":"42","author":"Karolchik","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011224511_B17","doi-asserted-by":"crossref","first-page":"1003","DOI":"10.1093\/bioinformatics\/btt637","article-title":"Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser","volume":"30","author":"Raney","year":"2014","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011224511_B18","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1016\/j.molcel.2013.03.001","article-title":"Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing","volume":"50","author":"Pandit","year":"2013","journal-title":"Mol. Cell"},{"key":"key\n\t\t\t\t20171011224511_B19","doi-asserted-by":"crossref","first-page":"440","DOI":"10.1126\/science.1238522","article-title":"Molecular biology. A circuitous route to noncoding RNA","volume":"340","author":"Wilusz","year":"2013","journal-title":"Science"},{"key":"key\n\t\t\t\t20171011224511_B20","doi-asserted-by":"crossref","first-page":"384","DOI":"10.1038\/nature11993","article-title":"Natural RNA circles function as efficient microRNA sponges","volume":"495","author":"Hansen","year":"2013","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171011224511_B21","doi-asserted-by":"crossref","first-page":"333","DOI":"10.1038\/nature11928","article-title":"Circular RNAs are a large class of animal RNAs with regulatory potency","volume":"495","author":"Memczak","year":"2013","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171011224511_B22","doi-asserted-by":"crossref","first-page":"559","DOI":"10.1038\/nmeth.1608","article-title":"A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins","volume":"8","author":"Kishore","year":"2011","journal-title":"Nat. Methods"},{"key":"key\n\t\t\t\t20171011224511_B23","doi-asserted-by":"crossref","first-page":"142","DOI":"10.1093\/bioinformatics\/btr608","article-title":"AURA: Atlas of UTR Regulatory Activity","volume":"28","author":"Dassi","year":"2012","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011224511_B24","doi-asserted-by":"crossref","first-page":"D92","DOI":"10.1093\/nar\/gkt1248","article-title":"starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data","volume":"42","author":"Li","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011224511_B25","doi-asserted-by":"crossref","first-page":"637","DOI":"10.1101\/gad.235770.113","article-title":"Rbfox2 controls autoregulation in RNA-binding protein networks","volume":"28","author":"Jangi","year":"2014","journal-title":"Genes Dev."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/43\/D1\/D160\/17437511\/gku1180.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:41:49Z","timestamp":1522680109000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/43\/D1\/D160\/2439068\/DoRiNA-20upgrading-the-doRiNA-database-of-RNA"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,11,21]]},"references-count":25,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2014,11,21]]},"published-print":{"date-parts":[[2015,1,28]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gku1180","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published-other":{"date-parts":[[2015,1,28]]},"published":{"date-parts":[[2014,11,21]]}}}