{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,27]],"date-time":"2026-03-27T22:23:48Z","timestamp":1774650228405,"version":"3.50.1"},"reference-count":27,"publisher":"Oxford University Press (OUP)","issue":"W1","license":[{"start":{"date-parts":[[2016,11,10]],"date-time":"2016-11-10T00:00:00Z","timestamp":1478736000000},"content-version":"vor","delay-in-days":904,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,7,1]]},"DOI":"10.1093\/nar\/gku396","type":"journal-article","created":{"date-parts":[[2014,5,22]],"date-time":"2014-05-22T00:29:11Z","timestamp":1400718551000},"page":"W350-W355","source":"Crossref","is-referenced-by-count":278,"title":["LocTree3 prediction of localization"],"prefix":"10.1093","volume":"42","author":[{"given":"Tatyana","family":"Goldberg","sequence":"first","affiliation":[]},{"given":"Maximilian","family":"Hecht","sequence":"additional","affiliation":[]},{"given":"Tobias","family":"Hamp","sequence":"additional","affiliation":[]},{"given":"Timothy","family":"Karl","sequence":"additional","affiliation":[]},{"given":"Guy","family":"Yachdav","sequence":"additional","affiliation":[]},{"given":"Nadeem","family":"Ahmed","sequence":"additional","affiliation":[]},{"given":"Uwe","family":"Altermann","sequence":"additional","affiliation":[]},{"given":"Philipp","family":"Angerer","sequence":"additional","affiliation":[]},{"given":"Sonja","family":"Ansorge","sequence":"additional","affiliation":[]},{"given":"Kinga","family":"Balasz","sequence":"additional","affiliation":[]},{"given":"Michael","family":"Bernhofer","sequence":"additional","affiliation":[]},{"given":"Alexander","family":"Betz","sequence":"additional","affiliation":[]},{"given":"Laura","family":"Cizmadija","sequence":"additional","affiliation":[]},{"given":"Kieu Trinh","family":"Do","sequence":"additional","affiliation":[]},{"given":"Julia","family":"Gerke","sequence":"additional","affiliation":[]},{"given":"Robert","family":"Greil","sequence":"additional","affiliation":[]},{"given":"Vadim","family":"Joerdens","sequence":"additional","affiliation":[]},{"given":"Maximilian","family":"Hastreiter","sequence":"additional","affiliation":[]},{"given":"Katharina","family":"Hembach","sequence":"additional","affiliation":[]},{"given":"Max","family":"Herzog","sequence":"additional","affiliation":[]},{"given":"Maria","family":"Kalemanov","sequence":"additional","affiliation":[]},{"given":"Michael","family":"Kluge","sequence":"additional","affiliation":[]},{"given":"Alice","family":"Meier","sequence":"additional","affiliation":[]},{"given":"Hassan","family":"Nasir","sequence":"additional","affiliation":[]},{"given":"Ulrich","family":"Neumaier","sequence":"additional","affiliation":[]},{"given":"Verena","family":"Prade","sequence":"additional","affiliation":[]},{"given":"Jonas","family":"Reeb","sequence":"additional","affiliation":[]},{"given":"Aleksandr","family":"Sorokoumov","sequence":"additional","affiliation":[]},{"given":"Ilira","family":"Troshani","sequence":"additional","affiliation":[]},{"given":"Susann","family":"Vorberg","sequence":"additional","affiliation":[]},{"given":"Sonja","family":"Waldraff","sequence":"additional","affiliation":[]},{"given":"Jonas","family":"Zierer","sequence":"additional","affiliation":[]},{"given":"Henrik","family":"Nielsen","sequence":"additional","affiliation":[]},{"given":"Burkhard","family":"Rost","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2014,5,21]]},"reference":[{"key":"key\n\t\t\t\t20171011195718_B1","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1093\/nar\/25.1.31","article-title":"The SWISS-PROT protein sequence data bank and its supplement TrEMBL","volume":"25","author":"Bairoch","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195718_B2","doi-asserted-by":"crossref","first-page":"240","DOI":"10.1186\/gb-2003-4-12-240","article-title":"Localizing the proteome","volume":"4","author":"Simpson","year":"2003","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20171011195718_B3","doi-asserted-by":"crossref","first-page":"686","DOI":"10.1038\/nature02026","article-title":"Global analysis of protein localization in budding yeast","volume":"425","author":"Huh","year":"2003","journal-title":"Nature"},{"key":"key\n\t\t\t\t20171011195718_B4","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1016\/S0168-9525(99)01927-7","article-title":"Bridging the gap between sequence and function","volume":"16","author":"Koonin","year":"2000","journal-title":"Trends Genet."},{"key":"key\n\t\t\t\t20171011195718_B5","doi-asserted-by":"crossref","DOI":"10.1038\/nmeth.2340","article-title":"A large-scale evaluation of computational protein function prediction","volume":"10","author":"Radivojac","year":"2013","journal-title":"Nat. Methods"},{"key":"key\n\t\t\t\t20171011195718_B6","doi-asserted-by":"crossref","first-page":"995","DOI":"10.1038\/nrm2281","article-title":"Predicting protein function from sequence and structure","volume":"8","author":"Lee","year":"2007","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"key\n\t\t\t\t20171011195718_B7","doi-asserted-by":"crossref","first-page":"643","DOI":"10.1002\/prot.21018","article-title":"Prediction of protein subcellular localization","volume":"64","author":"Yu","year":"2006","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171011195718_B8","doi-asserted-by":"crossref","first-page":"W585","DOI":"10.1093\/nar\/gkm259","article-title":"WoLF PSORT: protein localization predictor","volume":"35","author":"Horton","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195718_B9","doi-asserted-by":"crossref","first-page":"W497","DOI":"10.1093\/nar\/gkq477","article-title":"YLoc\u2013an interpretable web server for predicting subcellular localization","volume":"38","author":"Briesemeister","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195718_B10","doi-asserted-by":"crossref","first-page":"1608","DOI":"10.1093\/bioinformatics\/btq249","article-title":"PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes","volume":"26","author":"Yu","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011195718_B11","doi-asserted-by":"crossref","first-page":"3970","DOI":"10.1002\/pmic.201000274","article-title":"Prediction of subcellular locations of proteins: where to proceed","volume":"10","author":"Imai","year":"2010","journal-title":"Proteomics"},{"key":"key\n\t\t\t\t20171011195718_B12","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195718_B13","doi-asserted-by":"crossref","first-page":"i458","DOI":"10.1093\/bioinformatics\/bts390","article-title":"LocTree2 predicts localization for all domains of life","volume":"28","author":"Goldberg","year":"2012","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011195718_B14","volume-title":"Molecular Biology of the Cell","author":"Alberts","year":"2002","edition":"4th edn"},{"key":"key\n\t\t\t\t20171011195718_B15","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1007\/s00726-013-1491-3","article-title":"SCL-Epred: a generalised de novo eukaryotic protein subcellular localisation predictor","volume":"45","author":"Mooney","year":"2013","journal-title":"Amino Acids"},{"key":"key\n\t\t\t\t20171011195718_B16","first-page":"152","article-title":"Profile-based string kernels for remote homology detection and motif extraction","volume-title":"Proceedings\/IEEE Computational Systems Bioinformatics Conference, CSB","author":"Kuang","year":"2004"},{"key":"key\n\t\t\t\t20171011195718_B17","doi-asserted-by":"crossref","first-page":"e68459","DOI":"10.1371\/journal.pone.0068459","article-title":"Accelerating the original profile kernel","volume":"8","author":"Hamp","year":"2013","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20171011195718_B18","doi-asserted-by":"crossref","first-page":"D565","DOI":"10.1093\/nar\/gkr1048","article-title":"The UniProt-GO Annotation database in 2011","volume":"40","author":"Dimmer","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195718_B19","doi-asserted-by":"crossref","first-page":"398968","DOI":"10.1155\/2013\/398968","article-title":"Cloud prediction of protein structure and function with PredictProtein for Debian","volume":"2013","author":"Kajan","year":"2013","journal-title":"BioMed. Res. Int."},{"key":"key\n\t\t\t\t20171011195718_B20","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/gku366","article-title":"PredictProtein \u2013 an open resource for online prediction of protein structural and functional features","author":"Yachdav","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195718_B21","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1002\/prot.340090107","article-title":"Database of homology-derived protein structures and the structural meaning of sequence alignment","volume":"9","author":"Sander","year":"1991","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171011195718_B22","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1093\/protein\/12.2.85","article-title":"Twilight zone of protein sequence alignments","volume":"12","author":"Rost","year":"1999","journal-title":"Protein Eng."},{"key":"key\n\t\t\t\t20171011195718_B23","doi-asserted-by":"crossref","first-page":"3789","DOI":"10.1093\/nar\/gkg620","article-title":"UniqueProt: creating representative protein sequence sets","volume":"31","author":"Mika","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011195718_B24","doi-asserted-by":"crossref","first-page":"595","DOI":"10.1016\/S0022-2836(02)00016-5","article-title":"Enzyme function less conserved than anticipated","volume":"318","author":"Rost","year":"2002","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20171011195718_B25","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1002\/prot.10029","article-title":"Alignments grow, secondary structure prediction improves","volume":"46","author":"Przybylski","year":"2002","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20171011195718_B26","doi-asserted-by":"crossref","first-page":"460","DOI":"10.1016\/S0076-6879(96)66029-7","article-title":"Local alignment statistics","volume":"266","author":"Altschul","year":"1996","journal-title":"Methods Enzymol."},{"key":"key\n\t\t\t\t20171011195718_B27","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/nar\/28.1.235","article-title":"The Protein Data Bank","volume":"28","author":"Berman","year":"2000","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/42\/W1\/W350\/17423232\/gku396.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:42:11Z","timestamp":1522680131000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/42\/W1\/W350\/2437106\/LocTree3-prediction-of-localization"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,5,21]]},"references-count":27,"journal-issue":{"issue":"W1","published-online":{"date-parts":[[2014,5,21]]},"published-print":{"date-parts":[[2014,7,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gku396","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published-other":{"date-parts":[[2014,7,1]]},"published":{"date-parts":[[2014,5,21]]}}}