{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,3]],"date-time":"2024-08-03T18:55:34Z","timestamp":1722711334607},"reference-count":24,"publisher":"Oxford University Press (OUP)","issue":"W1","license":[{"start":{"date-parts":[[2016,11,10]],"date-time":"2016-11-10T00:00:00Z","timestamp":1478736000000},"content-version":"vor","delay-in-days":871,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,7,1]]},"DOI":"10.1093\/nar\/gku450","type":"journal-article","created":{"date-parts":[[2014,6,24]],"date-time":"2014-06-24T05:09:58Z","timestamp":1403586598000},"page":"W430-W435","source":"Crossref","is-referenced-by-count":9,"title":["PubServer: literature searches by homology"],"prefix":"10.1093","volume":"42","author":[{"given":"Lukasz","family":"Jaroszewski","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Laszlo","family":"Koska","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mayya","family":"Sedova","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Adam","family":"Godzik","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2014,6,23]]},"reference":[{"key":"key\n\t\t\t\t20171011200305_B1","doi-asserted-by":"crossref","first-page":"e63184","DOI":"10.1371\/journal.pone.0063184","article-title":"Database citation in full text biomedical articles","volume":"8","author":"Kafkas","year":"2013","journal-title":"PloS One"},{"key":"key\n\t\t\t\t20171011200305_B2","doi-asserted-by":"crossref","first-page":"bas026","DOI":"10.1093\/database\/bas026","article-title":"Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE","volume":"2012","author":"Neveol","year":"2012","journal-title":"Database"},{"key":"key\n\t\t\t\t20171011200305_B3","doi-asserted-by":"crossref","first-page":"D191","DOI":"10.1093\/nar\/gkt1140","article-title":"Activities at the Universal Protein Resource (UniProt)","volume":"42","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011200305_B4","doi-asserted-by":"crossref","first-page":"D36","DOI":"10.1093\/nar\/gks1195","article-title":"GenBank","volume":"41","author":"Benson","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011200305_B5","doi-asserted-by":"crossref","first-page":"baq020","DOI":"10.1093\/database\/baq020","article-title":"GeneCards Version 3: the human gene integrator","volume":"2010","author":"Safran","year":"2010","journal-title":"Database"},{"key":"key\n\t\t\t\t20171011200305_B6","doi-asserted-by":"crossref","first-page":"D793","DOI":"10.1093\/nar\/gkn665","article-title":"McKusick's Online Mendelian Inheritance in Man (OMIM)","volume":"37","author":"Amberger","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011200305_B7","doi-asserted-by":"crossref","first-page":"D810","DOI":"10.1093\/nar\/gkt1225","article-title":"The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse","volume":"42","author":"Blake","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011200305_B8","doi-asserted-by":"crossref","first-page":"D605","DOI":"10.1093\/nar\/gks1027","article-title":"EcoCyc: fusing model organism databases with systems biology","volume":"41","author":"Keseler","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011200305_B9","doi-asserted-by":"crossref","first-page":"D222","DOI":"10.1093\/nar\/gkt1223","article-title":"Pfam: the protein families database","volume":"42","author":"Finn","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011200305_B10","doi-asserted-by":"crossref","first-page":"1148","DOI":"10.1107\/S1744309110001685","article-title":"DUFs: families in search of function","volume":"66","author":"Bateman","year":"2010","journal-title":"Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun."},{"key":"key\n\t\t\t\t20171011200305_B11","doi-asserted-by":"crossref","first-page":"1034","DOI":"10.1093\/bioinformatics\/btr047","article-title":"GeneReporter\u2013sequence-based document retrieval and annotation","volume":"27","author":"Bartsch","year":"2011","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011200305_B12","doi-asserted-by":"crossref","first-page":"3450","DOI":"10.1093\/bioinformatics\/bti528","article-title":"MineBlast: a literature presentation service supporting protein annotation by data mining of BLAST results","volume":"21","author":"Dieterich","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011200305_B13","doi-asserted-by":"crossref","first-page":"442","DOI":"10.1186\/1471-2105-9-442","article-title":"Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data","volume":"9","author":"Gilchrist","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20171011200305_B14","doi-asserted-by":"crossref","first-page":"4196","DOI":"10.1093\/bioinformatics\/bti675","article-title":"METIS: multiple extraction techniques for informative sentences","volume":"21","author":"Mitchell","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011200305_B15","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1093\/bioinformatics\/btg375","article-title":"MedBlast: searching articles related to a biological sequence","volume":"20","author":"Tu","year":"2004","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20171011200305_B16","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20171011200305_B17","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011200305_B18","doi-asserted-by":"crossref","first-page":"D7","DOI":"10.1093\/nar\/gkt1146","article-title":"Database resources of the National Center for Biotechnology Information","volume":"42","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011200305_B19","doi-asserted-by":"crossref","first-page":"baq036","DOI":"10.1093\/database\/baq036","article-title":"PubMed and beyond: a survey of web tools for searching biomedical literature","volume":"2011","author":"Lu","year":"2011","journal-title":"Database"},{"key":"key\n\t\t\t\t20171011200305_B20","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1136\/jamia.1998.0050052","article-title":"UMLS-based conceptual queries to biomedical information databases: an overview of the project ARIANE. Unified Medical Language System","volume":"5","author":"Joubert","year":"1998","journal-title":"J. Am. Med. Inform. Assoc."},{"key":"key\n\t\t\t\t20171011200305_B21","volume-title":"Release 5 of the 12dicts word lists","author":"Beale","year":"2007"},{"key":"key\n\t\t\t\t20171011200305_B22","doi-asserted-by":"crossref","first-page":"W284","DOI":"10.1093\/nar\/gki418","article-title":"FFAS03: a server for profile\u2013profile sequence alignments","volume":"33","author":"Jaroszewski","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171011200305_B23","doi-asserted-by":"crossref","first-page":"3736","DOI":"10.1128\/JB.00216-09","article-title":"The conserved sporulation protein YneE inhibits DNA replication in Bacillus subtilis","volume":"191","author":"Rahn-Lee","year":"2009","journal-title":"J. Bacteriol."},{"key":"key\n\t\t\t\t20171011200305_B24","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology. The Gene Ontology Consortium","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat. Genet."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/42\/W1\/W430\/7448273\/gku450.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:42:13Z","timestamp":1522680133000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/42\/W1\/W430\/2437878\/PubServer-literature-searches-by-homology"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,6,23]]},"references-count":24,"journal-issue":{"issue":"W1","published-online":{"date-parts":[[2014,6,23]]},"published-print":{"date-parts":[[2014,7,1]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gku450","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published-other":{"date-parts":[[2014,7,1]]},"published":{"date-parts":[[2014,6,23]]}}}