{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T12:32:56Z","timestamp":1769949176735,"version":"3.49.0"},"reference-count":17,"publisher":"Oxford University Press (OUP)","issue":"W1","license":[{"start":{"date-parts":[[2017,5,22]],"date-time":"2017-05-22T00:00:00Z","timestamp":1495411200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017,7,3]]},"DOI":"10.1093\/nar\/gkx462","type":"journal-article","created":{"date-parts":[[2017,5,16]],"date-time":"2017-05-16T15:11:00Z","timestamp":1494947460000},"page":"W484-W489","source":"Crossref","is-referenced-by-count":43,"title":["LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes"],"prefix":"10.1093","volume":"45","author":[{"given":"Andres","family":"Ca\u00f1ada","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0309-604X","authenticated-orcid":false,"given":"Salvador","family":"Capella-Gutierrez","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Obdulia","family":"Rabal","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Julen","family":"Oyarzabal","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alfonso","family":"Valencia","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martin","family":"Krallinger","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2017,5,22]]},"reference":[{"key":"key\n\t\t\t\t20170704100021_B1","doi-asserted-by":"crossref","first-page":"506","DOI":"10.1002\/minf.201100005","article-title":"Text mining for drugs and chemical compounds: methods, tools and applications","volume":"30","year":"2011","journal-title":"Mol. Inform."},{"key":"key\n\t\t\t\t20170704100021_B2","doi-asserted-by":"crossref","first-page":"S5","DOI":"10.1186\/2041-1480-3-S3-S5","article-title":"Ranking relations between diseases, drugs and genes for a curation task","volume":"3","year":"2012","journal-title":"J. Biomed. Semantics"},{"key":"key\n\t\t\t\t20170704100021_B3","doi-asserted-by":"crossref","first-page":"326","DOI":"10.1186\/1471-2105-10-326","article-title":"Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)","volume":"10","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170704100021_B4","first-page":"410","article-title":"Discovery and explanation of drug-drug interactions via text mining. In Pacific symposium on biocomputing","year":"2012","journal-title":"Pac. Symp. Biocomput."},{"key":"key\n\t\t\t\t20170704100021_B5","doi-asserted-by":"crossref","first-page":"i547","DOI":"10.1093\/bioinformatics\/btq382","article-title":"Discovering drug\u2013drug interactions: a text-mining and reasoning approach based on properties of drug metabolism","volume":"26","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170704100021_B6","first-page":"bat080","article-title":"A CTD\u2013Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug\u2013disease and drug\u2013phenotype interactions","year":"2013","journal-title":"Database"},{"key":"key\n\t\t\t\t20170704100021_B7","doi-asserted-by":"crossref","first-page":"731","DOI":"10.1056\/NEJMra052270","article-title":"Drug-related hepatotoxicity","volume":"354","year":"2006","journal-title":"N. Engl. J. Med."},{"key":"key\n\t\t\t\t20170704100021_B8","first-page":"D972","article-title":"The Comparative Toxicogenomics Database: update 2017","volume":"45","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20170704100021_B9","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1016\/j.drudis.2011.05.007","article-title":"\u2018FDA-approved drug labeling for the study of drug-induced liver injury,\u2019","volume":"16","year":"2011","journal-title":"Drug Discov. Today"},{"key":"key\n\t\t\t\t20170704100021_B10","first-page":"171","article-title":"Cheminformatics analysis of assertions mined from literature that describe drug-induced liver injury in different species","volume":"23","year":"2009","journal-title":"Chem. Res. Toxicol."},{"key":"key\n\t\t\t\t20170704100021_B11","doi-asserted-by":"crossref","first-page":"1633","DOI":"10.1093\/bioinformatics\/bts183","article-title":"ChemSpot: a hybrid system for chemical named entity recognition","volume":"28","year":"2012","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20170704100021_B12","first-page":"baw119","article-title":"Overview of the interactive task in BioCreative V","year":"2016","journal-title":"Database (Oxford)"},{"key":"key\n\t\t\t\t20170704100021_B13","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1038\/nrg1768","article-title":"Literature mining for the biologist: from information retrieval to biological discovery","volume":"7","year":"2006","journal-title":"Nat. Rev. Genet."},{"key":"key\n\t\t\t\t20170704100021_B14","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1016\/j.molcel.2006.02.012","article-title":"Biomedical language processing: what's beyond PubMed?","volume":"21","year":"2006","journal-title":"Mol. Cell"},{"key":"key\n\t\t\t\t20170704100021_B15","doi-asserted-by":"crossref","first-page":"885","DOI":"10.1016\/j.jbi.2012.04.008","article-title":"Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports","volume":"45","year":"2012","journal-title":"J. Biomed. Inform."},{"key":"key\n\t\t\t\t20170704100021_B16","article-title":"Svmlight: Support vector machine","year":"1999"},{"key":"key\n\t\t\t\t20170704100021_B17","first-page":"407","article-title":"Phosphodiesterase-5 (PDE5) inhibitors in the management of erectile dysfunction","volume":"38","year":"2013","journal-title":"Pharm. Ther."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/45\/W1\/W484\/18137692\/gkx462.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T10:41:03Z","timestamp":1522665663000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article-lookup\/doi\/10.1093\/nar\/gkx462"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,5,22]]},"references-count":17,"journal-issue":{"issue":"W1","published-online":{"date-parts":[[2017,5,22]]},"published-print":{"date-parts":[[2017,7,3]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkx462","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,5,22]]}}}