{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,16]],"date-time":"2026-01-16T13:29:40Z","timestamp":1768570180287,"version":"3.49.0"},"reference-count":44,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2017,9,5]],"date-time":"2017-09-05T00:00:00Z","timestamp":1504569600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,1,4]]},"DOI":"10.1093\/nar\/gkx796","type":"journal-article","created":{"date-parts":[[2017,8,30]],"date-time":"2017-08-30T11:09:21Z","timestamp":1504091361000},"page":"D71-D77","source":"Crossref","is-referenced-by-count":40,"title":["dbCoRC: a database of core transcriptional regulatory circuitries modeled by H3K27ac ChIP-seq signals"],"prefix":"10.1093","volume":"46","author":[{"given":"Moli","family":"Huang","sequence":"first","affiliation":[]},{"given":"Ye","family":"Chen","sequence":"additional","affiliation":[]},{"given":"Manqiu","family":"Yang","sequence":"additional","affiliation":[]},{"given":"Anyuan","family":"Guo","sequence":"additional","affiliation":[]},{"given":"Ying","family":"Xu","sequence":"additional","affiliation":[]},{"given":"Liang","family":"Xu","sequence":"additional","affiliation":[]},{"given":"H\u00a0Phillip","family":"Koeffler","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2017,9,5]]},"reference":[{"key":"key\n\t\t\t\t20180103190633_B1","doi-asserted-by":"crossref","first-page":"D76","DOI":"10.1093\/nar\/gku887","article-title":"AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors","volume":"43","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B2","doi-asserted-by":"crossref","first-page":"663","DOI":"10.1016\/j.cell.2006.07.024","article-title":"Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors","volume":"126","year":"2006","journal-title":"Cell"},{"key":"key\n\t\t\t\t20180103190633_B3","doi-asserted-by":"crossref","first-page":"587","DOI":"10.1038\/nature08533","article-title":"Forcing cells to change lineages","volume":"462","year":"2009","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180103190633_B4","doi-asserted-by":"crossref","first-page":"1237","DOI":"10.1016\/j.cell.2013.02.014","article-title":"Transcriptional regulation and its misregulation in disease","volume":"152","year":"2013","journal-title":"Cell"},{"key":"key\n\t\t\t\t20180103190633_B5","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1016\/j.cell.2013.03.035","article-title":"Master transcription factors and mediator establish super-enhancers at key cell identity genes","volume":"153","year":"2013","journal-title":"Cell"},{"key":"key\n\t\t\t\t20180103190633_B6","doi-asserted-by":"crossref","first-page":"1274","DOI":"10.1016\/j.cell.2012.04.040","article-title":"Circuitry and dynamics of human transcription factor regulatory networks","volume":"150","year":"2012","journal-title":"Cell"},{"key":"key\n\t\t\t\t20180103190633_B7","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1101\/gad.224503","article-title":"Multipotent cell lineages in early mouse development depend on SOX2 function","volume":"17","year":"2003","journal-title":"Genes Dev."},{"key":"key\n\t\t\t\t20180103190633_B8","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1038\/ng1760","article-title":"The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells","volume":"38","year":"2006","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t20180103190633_B9","doi-asserted-by":"crossref","first-page":"947","DOI":"10.1016\/j.cell.2005.08.020","article-title":"Core transcriptional regulatory circuitry in human embryonic stem cells","volume":"122","year":"2005","journal-title":"Cell"},{"key":"key\n\t\t\t\t20180103190633_B10","doi-asserted-by":"crossref","first-page":"440","DOI":"10.1016\/j.stem.2012.02.016","article-title":"Distinct lineage specification roles for NANOG, OCT4, and SOX2 in human embryonic stem cells","volume":"10","year":"2012","journal-title":"Cell Stem Cell"},{"key":"key\n\t\t\t\t20180103190633_B11","doi-asserted-by":"crossref","first-page":"1049","DOI":"10.1016\/j.cell.2008.02.039","article-title":"An extended transcriptional network for pluripotency of embryonic stem cells","volume":"132","year":"2008","journal-title":"Cell"},{"key":"key\n\t\t\t\t20180103190633_B12","doi-asserted-by":"crossref","first-page":"521","DOI":"10.1016\/j.cell.2008.07.020","article-title":"Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells","volume":"134","year":"2008","journal-title":"Cell"},{"key":"key\n\t\t\t\t20180103190633_B13","doi-asserted-by":"crossref","first-page":"6031","DOI":"10.1128\/MCB.25.14.6031-6046.2005","article-title":"Reciprocal transcriptional regulation of Pou5f1 and Sox2 via the Oct4\/Sox2 complex in embryonic stem cells","volume":"25","year":"2005","journal-title":"Mol. Cell. Biol."},{"key":"key\n\t\t\t\t20180103190633_B14","article-title":"Core transcriptional regulatory circuitry in human hepatocytes","volume":"2","year":"2006","journal-title":"Mol. Syst. Biol."},{"key":"key\n\t\t\t\t20180103190633_B15","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1016\/j.ccr.2012.06.007","article-title":"Core transcriptional regulatory circuit controlled by the TAL1 complex in human T cell acute lymphoblastic leukemia","volume":"22","year":"2012","journal-title":"Cancer Cell"},{"key":"key\n\t\t\t\t20180103190633_B16","doi-asserted-by":"crossref","first-page":"1373","DOI":"10.1126\/science.1259037","article-title":"Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element","volume":"346","year":"2014","journal-title":"Science (New York, N.Y.)"},{"key":"key\n\t\t\t\t20180103190633_B17","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1101\/gr.197590.115","article-title":"Models of human core transcriptional regulatory circuitries","volume":"26","year":"2016","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20180103190633_B18","doi-asserted-by":"crossref","first-page":"884","DOI":"10.1158\/2159-8290.CD-16-1297","article-title":"PAX3-FOXO1 establishes myogenic super enhancers and confers BET bromodomain vulnerability","volume":"7","year":"2017","journal-title":"Cancer Discov."},{"key":"key\n\t\t\t\t20180103190633_B19","doi-asserted-by":"crossref","first-page":"934","DOI":"10.1016\/j.cell.2013.09.053","article-title":"Super-enhancers in the control of cell identity and disease","volume":"155","year":"2013","journal-title":"Cell"},{"key":"key\n\t\t\t\t20180103190633_B20","doi-asserted-by":"crossref","first-page":"320","DOI":"10.1016\/j.cell.2013.03.036","article-title":"Selective inhibition of tumor oncogenes by disruption of super-enhancers","volume":"153","year":"2013","journal-title":"Cell"},{"key":"key\n\t\t\t\t20180103190633_B21","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1038\/ng.3167","article-title":"What are super-enhancers","volume":"47","year":"2015","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t20180103190633_B22","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1016\/j.neuron.2017.04.022","article-title":"The dynamic epigenetic landscape of the retina during development, reprogramming, and tumorigenesis","volume":"94","year":"2017","journal-title":"Neuron"},{"key":"key\n\t\t\t\t20180103190633_B23","doi-asserted-by":"crossref","first-page":"34962","DOI":"10.1038\/srep34962","article-title":"FOXA and master transcription factors recruit Mediator and Cohesin to the core transcriptional regulatory circuitry of cancer cells","volume":"6","year":"2016","journal-title":"Scientific Rep."},{"key":"key\n\t\t\t\t20180103190633_B24","doi-asserted-by":"crossref","first-page":"1658","DOI":"10.1007\/s11095-017-2130-6","article-title":"Network reconstruction reveals that valproic acid activates neurogenic transcriptional programs in adult brain following traumatic injury","volume":"34","year":"2017","journal-title":"Pharmaceut. Res."},{"key":"key\n\t\t\t\t20180103190633_B25","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1038\/nature16546","article-title":"Active medulloblastoma enhancers reveal subgroup-specific cellular origins","volume":"530","year":"2016","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180103190633_B26","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1016\/j.molcel.2017.06.004","article-title":"BET bromodomain proteins function as master transcription elongation factors independent of CDK9 recruitment","volume":"67","year":"2017","journal-title":"Mol. Cell"},{"key":"key\n\t\t\t\t20180103190633_B27","doi-asserted-by":"crossref","first-page":"D164","DOI":"10.1093\/nar\/gkv1002","article-title":"dbSUPER: a database of super-enhancers in mouse and human genome","volume":"44","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B28","doi-asserted-by":"crossref","first-page":"D172","DOI":"10.1093\/nar\/gkv1243","article-title":"SEA: a super-enhancer archive","volume":"44","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B29","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1038\/nature11247","article-title":"An integrated encyclopedia of DNA elements in the human genome","volume":"489","year":"2012","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180103190633_B30","doi-asserted-by":"crossref","first-page":"1045","DOI":"10.1038\/nbt1010-1045","article-title":"The NIH roadmap epigenomics mapping consortium","volume":"28","year":"2010","journal-title":"Nat. Biotechnol."},{"key":"key\n\t\t\t\t20180103190633_B31","doi-asserted-by":"crossref","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","article-title":"Ultrafast and memory-efficient alignment of short DNA sequences to the human genome","volume":"10","year":"2009","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20180103190633_B32","doi-asserted-by":"crossref","first-page":"R137","DOI":"10.1186\/gb-2008-9-9-r137","article-title":"Model-based analysis of ChIP-Seq (MACS)","volume":"9","year":"2008","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20180103190633_B33","doi-asserted-by":"crossref","first-page":"D106","DOI":"10.1093\/nar\/gkq945","article-title":"TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins","volume":"39","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B34","doi-asserted-by":"crossref","first-page":"D108","DOI":"10.1093\/nar\/gkj143","article-title":"TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes","volume":"34","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B35","doi-asserted-by":"crossref","first-page":"W202","DOI":"10.1093\/nar\/gkp335","article-title":"MEME SUITE: tools for motif discovery and searching","volume":"37","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B36","doi-asserted-by":"crossref","first-page":"1017","DOI":"10.1093\/bioinformatics\/btr064","article-title":"FIMO: scanning for occurrences of a given motif","volume":"27","year":"2011","journal-title":"Bioinformatics (Oxford, England)"},{"key":"key\n\t\t\t\t20180103190633_B37","doi-asserted-by":"crossref","first-page":"D36","DOI":"10.1093\/nar\/gku1055","article-title":"Gene: a gene-centered information resource at NCBI","volume":"43","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B38","doi-asserted-by":"crossref","first-page":"D574","DOI":"10.1093\/nar\/gkv1209","article-title":"Ensembl Genomes 2016: more genomes, more complexity","volume":"44","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B39","doi-asserted-by":"crossref","first-page":"1047","DOI":"10.1038\/ng.f.217","article-title":"A wiki for the life sciences where authorship matters","volume":"40","year":"2008","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t20180103190633_B40","doi-asserted-by":"crossref","first-page":"D926","DOI":"10.1093\/nar\/gkt1270","article-title":"Expression Atlas update\u2014a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments","volume":"42","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B41","doi-asserted-by":"crossref","first-page":"D892","DOI":"10.1093\/nar\/gks835","article-title":"RhesusBase: a knowledgebase for the monkey research community","volume":"41","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B42","first-page":"D626","article-title":"The UCSC Genome Browser database: 2017 update","volume":"45","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190633_B43","doi-asserted-by":"crossref","first-page":"495","DOI":"10.1038\/nbt.1630","article-title":"GREAT improves functional interpretation of cis-regulatory regions","volume":"28","year":"2010","journal-title":"Nat. Biotechnol."},{"key":"key\n\t\t\t\t20180103190633_B44","doi-asserted-by":"crossref","first-page":"7364","DOI":"10.1093\/nar\/gkq617","article-title":"Genomic repertoires of DNA-binding transcription factors across the tree of life","volume":"38","year":"2010","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/46\/D1\/D71\/23162540\/gkx796.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T14:41:19Z","timestamp":1522680079000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/46\/D1\/D71\/4103600"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,9,5]]},"references-count":44,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2017,9,5]]},"published-print":{"date-parts":[[2018,1,4]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkx796","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2018,1,4]]},"published":{"date-parts":[[2017,9,5]]}}}