{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,3]],"date-time":"2026-03-03T06:26:47Z","timestamp":1772519207596,"version":"3.50.1"},"reference-count":20,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2017,10,24]],"date-time":"2017-10-24T00:00:00Z","timestamp":1508803200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,1,4]]},"DOI":"10.1093\/nar\/gkx995","type":"journal-article","created":{"date-parts":[[2017,10,20]],"date-time":"2017-10-20T15:13:25Z","timestamp":1508512405000},"page":"D175-D180","source":"Crossref","is-referenced-by-count":15,"title":["MGA repository: a curated data resource for ChIP-seq and other genome annotated data"],"prefix":"10.1093","volume":"46","author":[{"given":"Ren\u00e9","family":"Dr\u00e9os","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Giovanna","family":"Ambrosini","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Romain","family":"Groux","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rouayda Cavin","family":"P\u00e9rier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Philipp","family":"Bucher","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2017,10,24]]},"reference":[{"key":"key\n\t\t\t\t20180103190644_B1","doi-asserted-by":"crossref","first-page":"D1005","DOI":"10.1093\/nar\/gkq1184","article-title":"NCBI GEO: archive for functional genomics data sets\u201410 years on","volume":"39","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190644_B2","first-page":"D987","article-title":"ArrayExpress update\u2014trends in database growth and links to data analysis tools","volume":"41","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190644_B3","doi-asserted-by":"crossref","first-page":"938","DOI":"10.1186\/s12864-016-3288-8","article-title":"The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data","volume":"17","year":"2016","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20180103190644_B4","doi-asserted-by":"crossref","first-page":"R83","DOI":"10.1186\/gb-2011-12-8-r83","article-title":"Cistrome: an integrative platform for transcriptional regulation studies","volume":"12","year":"2011","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20180103190644_B5","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1007\/978-1-4939-3578-9_13","article-title":"NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets","volume":"1418","year":"2016","journal-title":"Methods Mol. Biol. Clifton NJ"},{"key":"key\n\t\t\t\t20180103190644_B6","doi-asserted-by":"crossref","first-page":"D851","DOI":"10.1093\/nar\/gkt966","article-title":"GeneProf data: a resource of curated, integrated and reusable high-throughput genomics experiments","volume":"42","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190644_B7","doi-asserted-by":"crossref","first-page":"3618","DOI":"10.1093\/nar\/gkg611","article-title":"Signal search analysis server","volume":"31","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190644_B8","doi-asserted-by":"crossref","first-page":"636","DOI":"10.1126\/science.1105136","article-title":"The ENCODE (ENCyclopedia Of DNA Elements) Project","volume":"306","year":"2004","journal-title":"Science"},{"key":"key\n\t\t\t\t20180103190644_B9","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1038\/nature14248","article-title":"Integrative analysis of 111 reference human epigenomes","volume":"518","year":"2015","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180103190644_B10","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1186\/s13059-014-0560-6","article-title":"Gateways to the FANTOM5 promoter level mammalian expression atlas","volume":"16","year":"2015","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20180103190644_B11","doi-asserted-by":"crossref","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","article-title":"Ultrafast and memory-efficient alignment of short DNA sequences to the human genome","volume":"10","year":"2009","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t20180103190644_B12","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1038\/nmeth.1923","article-title":"Fast gapped-read alignment with Bowtie 2","volume":"9","year":"2012","journal-title":"Nat. Methods"},{"key":"key\n\t\t\t\t20180103190644_B13","doi-asserted-by":"crossref","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The Sequence Alignment\/Map format and SAMtools","volume":"25","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180103190644_B14","doi-asserted-by":"crossref","first-page":"841","DOI":"10.1093\/bioinformatics\/btq033","article-title":"BEDTools: a flexible suite of utilities for comparing genomic features","volume":"26","year":"2010","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180103190644_B15","doi-asserted-by":"crossref","first-page":"110","DOI":"10.1101\/gr.097857.109","article-title":"Detection of nonneutral substitution rates on mammalian phylogenies","volume":"20","year":"2010","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20180103190644_B16","doi-asserted-by":"crossref","first-page":"1034","DOI":"10.1101\/gr.3715005","article-title":"Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes","volume":"15","year":"2005","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20180103190644_B17","doi-asserted-by":"crossref","first-page":"1152","DOI":"10.1093\/bioinformatics\/btr092","article-title":"ACT: aggregation and correlation toolbox for analyses of genome tracks","volume":"27","year":"2011","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180103190644_B18","first-page":"1798","article-title":"Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors., Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors","volume":"22","year":"2012","journal-title":"Genome Res Genome Res."},{"key":"key\n\t\t\t\t20180103190644_B19","doi-asserted-by":"crossref","first-page":"D51","DOI":"10.1093\/nar\/gkw1069","article-title":"The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms","volume":"45","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180103190644_B20","doi-asserted-by":"crossref","first-page":"1728","DOI":"10.1038\/nprot.2012.101","article-title":"Identifying ChIP-seq enrichment using MACS","volume":"7","year":"2012","journal-title":"Nat. Protoc."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/46\/D1\/D175\/23162952\/gkx995.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,4,2]],"date-time":"2018-04-02T10:41:26Z","timestamp":1522665686000},"score":1,"resource":{"primary":{"URL":"http:\/\/academic.oup.com\/nar\/article\/46\/D1\/D175\/4563313"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,10,24]]},"references-count":20,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2017,10,24]]},"published-print":{"date-parts":[[2018,1,4]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gkx995","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2018,1,4]]},"published":{"date-parts":[[2017,10,24]]}}}