{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,4]],"date-time":"2026-03-04T04:47:48Z","timestamp":1772599668369,"version":"3.50.1"},"reference-count":24,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2018,10,24]],"date-time":"2018-10-24T00:00:00Z","timestamp":1540339200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Technology of Japan"},{"DOI":"10.13039\/501100002241","name":"Japan Science and Technology Agency","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100002241","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,1,8]]},"DOI":"10.1093\/nar\/gky1002","type":"journal-article","created":{"date-parts":[[2018,10,10]],"date-time":"2018-10-10T03:06:39Z","timestamp":1539140799000},"page":"D69-D73","source":"Crossref","is-referenced-by-count":45,"title":["DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data"],"prefix":"10.1093","volume":"47","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7691-9812","authenticated-orcid":false,"given":"Yuichi","family":"Kodama","sequence":"first","affiliation":[{"name":"DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4138-1893","authenticated-orcid":false,"given":"Jun","family":"Mashima","sequence":"additional","affiliation":[{"name":"DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan"}]},{"given":"Takehide","family":"Kosuge","sequence":"additional","affiliation":[{"name":"DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan"}]},{"given":"Osamu","family":"Ogasawara","sequence":"additional","affiliation":[{"name":"DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan"}]}],"member":"286","published-online":{"date-parts":[[2018,10,24]]},"reference":[{"key":"key\n\t\t\t\t2019010800175408800_B1","doi-asserted-by":"crossref","first-page":"D30","DOI":"10.1093\/nar\/gkx926","article-title":"DNA Data Bank of Japan: 30th anniversary","volume":"46","author":"Kodama","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B2","doi-asserted-by":"crossref","first-page":"D41","DOI":"10.1093\/nar\/gkx1094","article-title":"GenBank","volume":"46","author":"Benson","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B3","doi-asserted-by":"crossref","first-page":"D36","DOI":"10.1093\/nar\/gkx1125","article-title":"The European Nucleotide Archive in 2017","volume":"46","author":"Silvester","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B4","doi-asserted-by":"crossref","first-page":"D48","DOI":"10.1093\/nar\/gkv1323","article-title":"The International Nucleotide Sequence Database Collaboration","volume":"44","author":"Cochrane","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B5","doi-asserted-by":"crossref","first-page":"D54","DOI":"10.1093\/nar\/gkr854","article-title":"The Sequence Read Archive: explosive growth of sequencing data","volume":"40","author":"Kodama","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B6","doi-asserted-by":"crossref","first-page":"1275","DOI":"10.4056\/sigs.4851102","article-title":"Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records","volume":"9","author":"Federhen","year":"2014","journal-title":"Stand. Genomic Sci."},{"key":"key\n\t\t\t\t2019010800175408800_B7","doi-asserted-by":"crossref","first-page":"1333","DOI":"10.1126\/science.298.5597.1333b","article-title":"Nucleotide sequence database policies","volume":"298","author":"Brunak","year":"2002","journal-title":"Science"},{"key":"key\n\t\t\t\t2019010800175408800_B8","first-page":"93","article-title":"The Gene Expression Omnibus Database","volume-title":"Methods in Molecular Biology","author":"Clough","year":"2016"},{"key":"key\n\t\t\t\t2019010800175408800_B9","doi-asserted-by":"crossref","first-page":"D1113","DOI":"10.1093\/nar\/gku1057","article-title":"ArrayExpress update\u2013simplifying data submissions","volume":"43","author":"Kolesnikov","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B10","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1186\/1471-2105-7-489","article-title":"A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB","volume":"7","author":"Rayner","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t2019010800175408800_B11","doi-asserted-by":"crossref","first-page":"D18","DOI":"10.1093\/nar\/gku1120","article-title":"The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data","volume":"43","author":"Kodama","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B12","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1089\/omi.2006.10.105","article-title":"Evidence standards in experimental and inferential INSDC Third Party Annotation data","volume":"10","author":"Cochrane","year":"2006","journal-title":"OMICS"},{"key":"key\n\t\t\t\t2019010800175408800_B13","doi-asserted-by":"crossref","first-page":"D819","DOI":"10.1093\/nar\/gkw1139","article-title":"The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data","volume":"45","author":"Wong","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B14","doi-asserted-by":"crossref","first-page":"692","DOI":"10.1038\/ng.3312","article-title":"The European Genome-phenome Archive of human data consented for biomedical research","volume":"47","author":"Lappalainen","year":"2015","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t2019010800175408800_B15","doi-asserted-by":"crossref","first-page":"S2","DOI":"10.1016\/j.je.2016.12.005","article-title":"Overview of the BioBank Japan Project: Study design and profile","volume":"27","author":"Nagai","year":"2017","journal-title":"J. Epidemiol."},{"key":"key\n\t\t\t\t2019010800175408800_B16","doi-asserted-by":"crossref","first-page":"365","DOI":"10.1038\/ng1201-365","article-title":"Minimum information about a microarray experiment (MIAME)\u2014toward standards for microarray data","volume":"29","author":"Brazma","year":"2001","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t2019010800175408800_B17","doi-asserted-by":"crossref","first-page":"1079","DOI":"10.1016\/j.crvi.2003.09.034","article-title":"CIBEX: center for information biology gene expression database","volume":"326","author":"Ikeo","journal-title":"C. R. Biol."},{"key":"key\n\t\t\t\t2019010800175408800_B18","doi-asserted-by":"crossref","first-page":"D25","DOI":"10.1093\/nar\/gks1152","article-title":"DDBJ new system and service refactoring","volume":"41","author":"Ogasawara","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B19","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B20","doi-asserted-by":"crossref","first-page":"2947","DOI":"10.1093\/bioinformatics\/btm404","article-title":"Clustal W and Clustal X version 2.0","volume":"23","author":"Larkin","year":"2007","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019010800175408800_B21","doi-asserted-by":"crossref","first-page":"W11","DOI":"10.1093\/nar\/gkp300","article-title":"Web API for biology with a workflow navigation system","volume":"37","author":"Kwon","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800175408800_B22","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","article-title":"MAFFT multiple sequence alignment software version 7: improvements in performance and usability","volume":"30","author":"Katoh","year":"2013","journal-title":"Mol. Biol. Evol."},{"key":"key\n\t\t\t\t2019010800175408800_B23","doi-asserted-by":"crossref","first-page":"383","DOI":"10.1093\/dnares\/dst017","article-title":"DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data","volume":"20","author":"Nagasaki","year":"2013","journal-title":"DNA Res."},{"key":"key\n\t\t\t\t2019010800175408800_B24","doi-asserted-by":"crossref","first-page":"1037","DOI":"10.1093\/bioinformatics\/btx713","article-title":"DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication","volume":"34","author":"Tanizawa","year":"2018","journal-title":"Bioinformatics"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/47\/D1\/D69\/27436085\/gky1002.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,10,26]],"date-time":"2019-10-26T00:43:31Z","timestamp":1572050611000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article\/47\/D1\/D69\/5144146"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,10,24]]},"references-count":24,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2018,10,24]]},"published-print":{"date-parts":[[2019,1,8]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gky1002","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2019,1,8]]},"published":{"date-parts":[[2018,10,24]]}}}