{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,12]],"date-time":"2026-06-12T03:51:44Z","timestamp":1781236304920,"version":"3.54.1"},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2018,11,5]],"date-time":"2018-11-05T00:00:00Z","timestamp":1541376000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100009708","name":"Novo Nordisk Foundation","doi-asserted-by":"crossref","award":["NNF10CC1016517"],"award-info":[{"award-number":["NNF10CC1016517"]}],"id":[{"id":"10.13039\/501100009708","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100009708","name":"Novo Nordisk Foundation","doi-asserted-by":"crossref","award":["NNF16OC0021746"],"award-info":[{"award-number":["NNF16OC0021746"]}],"id":[{"id":"10.13039\/501100009708","id-type":"DOI","asserted-by":"crossref"}]},{"name":"Netherlands Organization for Scientific Research","award":["863.15.002"],"award-info":[{"award-number":["863.15.002"]}]},{"DOI":"10.13039\/501100000266","name":"Engineering and Physical Sciences Research Council","doi-asserted-by":"publisher","award":["BB\/M017982\/1"],"award-info":[{"award-number":["BB\/M017982\/1"]}],"id":[{"id":"10.13039\/501100000266","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,1,8]]},"DOI":"10.1093\/nar\/gky1060","type":"journal-article","created":{"date-parts":[[2018,10,17]],"date-time":"2018-10-17T15:26:06Z","timestamp":1539789966000},"page":"D625-D630","source":"Crossref","is-referenced-by-count":181,"title":["The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters"],"prefix":"10.1093","volume":"47","author":[{"given":"Kai","family":"Blin","sequence":"first","affiliation":[{"name":"Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, Building 220, 2800 Kgs. Lyngby, Denmark"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vict\u00f2ria","family":"Pascal\u00a0Andreu","sequence":"additional","affiliation":[{"name":"Bioinformatics Group, Wageningen University, Wageningen, Netherlands"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Emmanuel L\u00a0C","family":"de\u00a0los\u00a0Santos","sequence":"additional","affiliation":[{"name":"Warwick Integrative Synthetic Biology Centre, University of Warwick, Coventry, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Francesco","family":"Del\u00a0Carratore","sequence":"additional","affiliation":[{"name":"Faculty of Science and Engineering, Manchester Institute of Biotechnology, University of Manchester, Manchester, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sang Yup","family":"Lee","sequence":"additional","affiliation":[{"name":"Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, Building 220, 2800 Kgs. Lyngby, Denmark"},{"name":"Department of Chemical and Biomolecular Engineering (BK21 Plus Program), Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2191-2821","authenticated-orcid":false,"given":"Marnix H","family":"Medema","sequence":"additional","affiliation":[{"name":"Bioinformatics Group, Wageningen University, Wageningen, Netherlands"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8260-5120","authenticated-orcid":false,"given":"Tilmann","family":"Weber","sequence":"additional","affiliation":[{"name":"Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, Building 220, 2800 Kgs. Lyngby, Denmark"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2018,11,5]]},"reference":[{"key":"key\n\t\t\t\t2019010803584286700_B1","doi-asserted-by":"crossref","first-page":"629","DOI":"10.1021\/acs.jnatprod.5b01055","article-title":"Natural products as sources of new drugs from 1981 to 2014","volume":"79","author":"Newman","year":"2016","journal-title":"J. Nat. Prod."},{"key":"key\n\t\t\t\t2019010803584286700_B2","doi-asserted-by":"crossref","first-page":"988","DOI":"10.1039\/C6NP00025H","article-title":"The evolution of genome mining in microbes \u2013 a review","volume":"33","author":"Ziemert","year":"2016","journal-title":"Nat. Prod. Rep."},{"key":"key\n\t\t\t\t2019010803584286700_B3","doi-asserted-by":"crossref","first-page":"639","DOI":"10.1038\/nchembio.1884","article-title":"Computational approaches to natural product discovery","volume":"11","author":"Medema","year":"2015","journal-title":"Nat. Chem. Biol."},{"key":"key\n\t\t\t\t2019010803584286700_B4","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1016\/j.synbio.2015.12.002","article-title":"The secondary metabolite bioinformatics portal: computational tools to facilitate synthetic biology of secondary metabolite production","volume":"1","author":"Weber","year":"2016","journal-title":"Synth. Syst. Biotechnol."},{"key":"key\n\t\t\t\t2019010803584286700_B5","doi-asserted-by":"crossref","first-page":"230","DOI":"10.1016\/j.ijmm.2014.02.001","article-title":"In silico tools for the analysis of antibiotic biosynthetic pathways","volume":"304","author":"Weber","year":"2014","journal-title":"Int. J. Med. Microbiol."},{"key":"key\n\t\t\t\t2019010803584286700_B6","doi-asserted-by":"crossref","first-page":"W339","DOI":"10.1093\/nar\/gkr466","article-title":"antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences","volume":"39","author":"Medema","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803584286700_B7","doi-asserted-by":"crossref","first-page":"W204","DOI":"10.1093\/nar\/gkt449","article-title":"antiSMASH 2.0\u2014a versatile platform for genome mining of secondary metabolite producers","volume":"41","author":"Blin","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803584286700_B8","doi-asserted-by":"crossref","first-page":"W237","DOI":"10.1093\/nar\/gkv437","article-title":"antiSMASH 3.0\u2014a comprehensive resource for the genome mining of biosynthetic gene clusters","volume":"43","author":"Weber","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803584286700_B9","doi-asserted-by":"crossref","first-page":"W36","DOI":"10.1093\/nar\/gkx319","article-title":"antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification","volume":"45","author":"Blin","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803584286700_B10","doi-asserted-by":"crossref","first-page":"625","DOI":"10.1038\/nchembio.1890","article-title":"Minimum information about a biosynthetic gene cluster","volume":"11","author":"Medema","year":"2015","journal-title":"Nat. Chem. Biol."},{"key":"key\n\t\t\t\t2019010803584286700_B11","doi-asserted-by":"crossref","first-page":"D555","DOI":"10.1093\/nar\/gkw960","article-title":"The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters","volume":"45","author":"Blin","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803584286700_B12","doi-asserted-by":"crossref","first-page":"3202","DOI":"10.1093\/bioinformatics\/btx400","article-title":"SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria","volume":"33","author":"Chevrette","year":"2017","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019010803584286700_B13","doi-asserted-by":"crossref","first-page":"D733","DOI":"10.1093\/nar\/gkv1189","article-title":"Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation","volume":"44","author":"O\u2019Leary","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803584286700_B14","first-page":"42","article-title":"GNU parallel - the command-line power tool","volume":"36","author":"Tange","year":"2011","journal-title":"Login: USENIX Mag."},{"key":"key\n\t\t\t\t2019010803584286700_B15","doi-asserted-by":"crossref","first-page":"470","DOI":"10.1038\/nchembio.2319","article-title":"A new genome-mining tool redefines the lasso peptide biosynthetic landscape","volume":"13","author":"Tietz","year":"2017","journal-title":"Nat. Chem. Biol."},{"key":"key\n\t\t\t\t2019010803584286700_B16","doi-asserted-by":"crossref","first-page":"996","DOI":"10.1038\/nbt.4229","article-title":"A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life","volume":"36","author":"Parks","year":"2018","journal-title":"Nat. Biotechnol."},{"key":"key\n\t\t\t\t2019010803584286700_B17","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1186\/1471-2105-11-24","article-title":"ETE: a python environment for tree exploration","volume":"11","author":"Huerta-Cepas","year":"2010","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t2019010803584286700_B18","doi-asserted-by":"crossref","first-page":"W242","DOI":"10.1093\/nar\/gkw290","article-title":"Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees","volume":"44","author":"Letunic","year":"2016","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/47\/D1\/D625\/27437289\/gky1060.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,10,26]],"date-time":"2019-10-26T21:42:26Z","timestamp":1572126146000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article\/47\/D1\/D625\/5160997"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,11,5]]},"references-count":18,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2018,11,5]]},"published-print":{"date-parts":[[2019,1,8]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gky1060","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2019,1,8]]},"published":{"date-parts":[[2018,11,5]]}}}