{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,7]],"date-time":"2026-03-07T11:21:57Z","timestamp":1772882517592,"version":"3.50.1"},"reference-count":34,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2018,11,8]],"date-time":"2018-11-08T00:00:00Z","timestamp":1541635200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["NIH R01GM123037"],"award-info":[{"award-number":["NIH R01GM123037"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["U01AR069395-01A1"],"award-info":[{"award-number":["U01AR069395-01A1"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["U01CA166886"],"award-info":[{"award-number":["U01CA166886"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,1,8]]},"DOI":"10.1093\/nar\/gky1067","type":"journal-article","created":{"date-parts":[[2018,11,1]],"date-time":"2018-11-01T16:54:39Z","timestamp":1541091279000},"page":"D994-D1004","source":"Crossref","is-referenced-by-count":75,"title":["FusionGDB: fusion gene annotation DataBase"],"prefix":"10.1093","volume":"47","author":[{"given":"Pora","family":"Kim","sequence":"first","affiliation":[{"name":"Center for Computational Systems Medicine, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA"}]},{"given":"Xiaobo","family":"Zhou","sequence":"additional","affiliation":[{"name":"Center for Computational Systems Medicine, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA"},{"name":"McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA"},{"name":"School of Dentistry, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA"}]}],"member":"286","published-online":{"date-parts":[[2018,11,8]]},"reference":[{"key":"key\n\t\t\t\t2019010803582776300_B1","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1186\/1471-2105-14-193","article-title":"FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq","volume":"14","author":"Liu","year":"2013","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t2019010803582776300_B2","doi-asserted-by":"crossref","first-page":"D790","DOI":"10.1093\/nar\/gkw1127","article-title":"ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions","volume":"45","author":"Gorohovski","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B3","doi-asserted-by":"crossref","first-page":"4846","DOI":"10.1038\/ncomms5846","article-title":"The landscape of kinase fusions in cancer","volume":"5","author":"Stransky","year":"2014","journal-title":"Nat. Commun."},{"key":"key\n\t\t\t\t2019010803582776300_B4","first-page":"D784","article-title":"ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining","volume":"45","author":"Lee","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B5","doi-asserted-by":"crossref","first-page":"D1144","DOI":"10.1093\/nar\/gkx1018","article-title":"TumorFusions: an integrative resource for cancer-associated transcript fusions","volume":"46","author":"Hu","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B6","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1016\/j.celrep.2018.03.050","article-title":"Driver fusions and their implications in the development and treatment of human cancers","volume":"23","author":"Gao","year":"2018","journal-title":"Cell Rep."},{"key":"key\n\t\t\t\t2019010803582776300_B7","doi-asserted-by":"crossref","first-page":"D754","DOI":"10.1093\/nar\/gkx1098","article-title":"Ensembl 2018","volume":"46","author":"Zerbino","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B8","doi-asserted-by":"crossref","first-page":"2699","DOI":"10.1093\/nar\/gky092","article-title":"UniProt: the universal protein knowledgebase","volume":"46","author":"UniProt Consortium, T.","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B9","first-page":"450","article-title":"Kinase impact assessment in the landscape of fusion genes that retain kinase domains: a pan-cancer study","volume":"19","author":"Kim","year":"2018","journal-title":"Brief. Bioinform."},{"key":"key\n\t\t\t\t2019010803582776300_B10","doi-asserted-by":"crossref","first-page":"110103","DOI":"10.18632\/oncotarget.22653","article-title":"Domain retention in transcription factor fusion genes and its biological and clinical implications: a pan-cancer study","volume":"8","author":"Kim","year":"2017","journal-title":"Oncotarget"},{"key":"key\n\t\t\t\t2019010803582776300_B11","doi-asserted-by":"crossref","first-page":"7094","DOI":"10.1093\/nar\/gkx423","article-title":"ChiPPI: a novel method for mapping chimeric protein-protein interactions uncovers selection principles of protein fusion events in cancer","volume":"45","author":"Frenkel-Morgenstern","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B12","doi-asserted-by":"crossref","first-page":"D1074","DOI":"10.1093\/nar\/gkx1037","article-title":"DrugBank 5.0: a major update to the DrugBank database for 2018","volume":"46","author":"Wishart","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B13","doi-asserted-by":"crossref","first-page":"D833","DOI":"10.1093\/nar\/gkw943","article-title":"DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants","volume":"45","author":"Pinero","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B14","doi-asserted-by":"crossref","first-page":"996","DOI":"10.1101\/gr.229102","article-title":"The human genome browser at UCSC","volume":"12","author":"Kent","year":"2002","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t2019010803582776300_B15","doi-asserted-by":"crossref","first-page":"1760","DOI":"10.1101\/gr.135350.111","article-title":"GENCODE: the reference human genome annotation for The ENCODE Project","volume":"22","author":"Harrow","year":"2012","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t2019010803582776300_B16","doi-asserted-by":"crossref","first-page":"D369","DOI":"10.1093\/nar\/gkw1102","article-title":"The BioGRID interaction database: 2017 update","volume":"45","author":"Chatr-Aryamontri","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B17","doi-asserted-by":"crossref","first-page":"D721","DOI":"10.1093\/nar\/gkl811","article-title":"CancerGenes: a gene selection resource for cancer genome projects","volume":"35","author":"Higgins","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B18","doi-asserted-by":"crossref","first-page":"D1023","DOI":"10.1093\/nar\/gkv1268","article-title":"TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes","volume":"44","author":"Zhao","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B19","doi-asserted-by":"crossref","first-page":"bav067","DOI":"10.1093\/database\/bav067","article-title":"EpiFactors: a comprehensive database of human epigenetic factors and complexes","volume":"2015","author":"Medvedeva","year":"2015","journal-title":"Database"},{"key":"key\n\t\t\t\t2019010803582776300_B20","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1016\/j.celrep.2018.03.076","article-title":"Genomic and molecular landscape of DNA damage repair deficiency across the cancer genome atlas","volume":"23","author":"Knijnenburg","year":"2018","journal-title":"Cell Reports"},{"key":"key\n\t\t\t\t2019010803582776300_B21","doi-asserted-by":"crossref","first-page":"D183","DOI":"10.1093\/nar\/gkw1138","article-title":"PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements","volume":"45","author":"Mi","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B22","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1186\/s12943-018-0776-2","article-title":"Role and targeting of anaplastic lymphoma kinase in cancer","volume":"17","author":"Della\u00a0Corte","year":"2018","journal-title":"Mol. Cancer"},{"key":"key\n\t\t\t\t2019010803582776300_B23","doi-asserted-by":"crossref","first-page":"164","DOI":"10.3390\/cancers9120164","article-title":"Non-canonical thinking for targeting ALK-fusion onco-proteins in lung cancer","volume":"9","author":"Wu","year":"2017","journal-title":"Cancers"},{"key":"key\n\t\t\t\t2019010803582776300_B24","doi-asserted-by":"crossref","first-page":"9526","DOI":"10.1074\/jbc.M007333200","article-title":"Activation of anaplastic lymphoma kinase receptor tyrosine kinase induces neuronal differentiation through the mitogen-activated protein kinase pathway","volume":"276","author":"Souttou","year":"2001","journal-title":"J. Biol. Chem."},{"key":"key\n\t\t\t\t2019010803582776300_B25","doi-asserted-by":"crossref","DOI":"10.1093\/database\/bay006","article-title":"The NCBI BioCollections database","volume":"2018","author":"Sharma","year":"2018","journal-title":"Database"},{"key":"key\n\t\t\t\t2019010803582776300_B26","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1016\/j.jtbi.2017.08.014","article-title":"Prediction of interface residue based on the features of residue interaction network","volume":"432","author":"Jiao","year":"2017","journal-title":"J. Theor. Biol."},{"key":"key\n\t\t\t\t2019010803582776300_B27","doi-asserted-by":"crossref","first-page":"22357","DOI":"10.1074\/jbc.M116.752626","article-title":"Targeted disruption of the interaction between WD-40 repeat protein 5 (WDR5) and Mixed Lineage Leukemia (MLL)\/SET1 family proteins specifically inhibits MLL1 and SETd1A methyltransferase complexes","volume":"291","author":"Alicea-Velazquez","year":"2016","journal-title":"J. Biol. Chem."},{"key":"key\n\t\t\t\t2019010803582776300_B28","doi-asserted-by":"crossref","first-page":"428","DOI":"10.1007\/s12185-012-1180-0","article-title":"Disordered epigenetic regulation in MLL-related leukemia","volume":"96","author":"Zhang","year":"2012","journal-title":"Int. J. Hematol."},{"key":"key\n\t\t\t\t2019010803582776300_B29","doi-asserted-by":"crossref","first-page":"447","DOI":"10.4155\/fmc.13.214","article-title":"Challenges and opportunities in targeting the menin-MLL interaction","volume":"6","author":"Cierpicki","year":"2014","journal-title":"Future Med. Chem."},{"key":"key\n\t\t\t\t2019010803582776300_B30","doi-asserted-by":"crossref","first-page":"14481","DOI":"10.1073\/pnas.0507401102","article-title":"Chromatin control of gene expression: mixed-lineage leukemia methyltransferase SETs the stage for transcription","volume":"102","author":"Slany","year":"2005","journal-title":"PNAS"},{"key":"key\n\t\t\t\t2019010803582776300_B31","doi-asserted-by":"crossref","first-page":"D1091","DOI":"10.1093\/nar\/gkx1121","article-title":"The IUPHAR\/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY","volume":"46","author":"Harding","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010803582776300_B32","doi-asserted-by":"crossref","first-page":"1096","DOI":"10.1126\/science.aac7041","article-title":"Identification and characterization of essential genes in the human genome","volume":"350","author":"Wang","year":"2015","journal-title":"Science"},{"key":"key\n\t\t\t\t2019010803582776300_B33","doi-asserted-by":"crossref","first-page":"1912","DOI":"10.1126\/science.1075762","article-title":"The protein kinase complement of the human genome","volume":"298","author":"Manning","year":"2002","journal-title":"Science"},{"key":"key\n\t\t\t\t2019010803582776300_B34","doi-asserted-by":"crossref","first-page":"777","DOI":"10.1016\/j.det.2015.05.015","article-title":"Monoclonal antibodies","volume":"33","author":"Geskin","year":"2015","journal-title":"Dermatol. Clin."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/47\/D1\/D994\/27437521\/gky1067.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,10,30]],"date-time":"2019-10-30T12:24:41Z","timestamp":1572438281000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article\/47\/D1\/D994\/5165347"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,11,8]]},"references-count":34,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2018,11,8]]},"published-print":{"date-parts":[[2019,1,8]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gky1067","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2019,1,8]]},"published":{"date-parts":[[2018,11,8]]}}}