{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,8,22]],"date-time":"2025-08-22T04:58:14Z","timestamp":1755838694690,"version":"3.37.3"},"reference-count":26,"publisher":"Oxford University Press (OUP)","issue":"W1","funder":[{"name":"Ministry of Science and ICT","award":["NRF-2014M3C9A3064706"],"award-info":[{"award-number":["NRF-2014M3C9A3064706"]}]},{"name":"Ministry of Education","award":["NRF-2012R1A1A2044389"],"award-info":[{"award-number":["NRF-2012R1A1A2044389"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,7,2]]},"DOI":"10.1093\/nar\/gky428","type":"journal-article","created":{"date-parts":[[2018,5,7]],"date-time":"2018-05-07T23:11:02Z","timestamp":1525734662000},"page":"W523-W529","source":"Crossref","is-referenced-by-count":30,"title":["ezTag: tagging biomedical concepts via interactive learning"],"prefix":"10.1093","volume":"46","author":[{"given":"Dongseop","family":"Kwon","sequence":"first","affiliation":[{"name":"School of Software Convergence, Myongji University, Seoul 03674, South Korea"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sun","family":"Kim","sequence":"additional","affiliation":[{"name":"National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chih-Hsuan","family":"Wei","sequence":"additional","affiliation":[{"name":"National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robert","family":"Leaman","sequence":"additional","affiliation":[{"name":"National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8301-9553","authenticated-orcid":false,"given":"Zhiyong","family":"Lu","sequence":"additional","affiliation":[{"name":"National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2018,5,18]]},"reference":[{"key":"key\n\t\t\t\t20180630062754_B1","doi-asserted-by":"crossref","first-page":"D158","DOI":"10.1093\/nar\/gkw1099","article-title":"UniProt: the universal protein knowledgebase","volume":"45","author":"The UniProt, C.","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630062754_B2","doi-asserted-by":"crossref","first-page":"i41","DOI":"10.1093\/bioinformatics\/btm229","article-title":"Manual curation is not sufficient for annotation of genomic databases","volume":"23","author":"Baumgartner","year":"2007","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180630062754_B3","doi-asserted-by":"crossref","first-page":"e1005017","DOI":"10.1371\/journal.pcbi.1005017","article-title":"Text mining genotype-phenotype relationships from biomedical literature for database curation and precision medicine","volume":"12","author":"Singhal","year":"2016","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20180630062754_B4","doi-asserted-by":"crossref","first-page":"3454","DOI":"10.1093\/bioinformatics\/btx439","article-title":"On expert curation and scalability: UniProtKB\/Swiss-Prot as a case study","volume":"33","author":"Poux","year":"2017","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180630062754_B5","doi-asserted-by":"crossref","first-page":"bau070","DOI":"10.1093\/database\/bau070","article-title":"Text-mining-assisted biocuration workflows in Argo","volume":"2014","author":"Rak","year":"2014","journal-title":"Database"},{"key":"key\n\t\t\t\t20180630062754_B6","doi-asserted-by":"crossref","first-page":"bau067","DOI":"10.1093\/database\/bau067","article-title":"Assisting manual literature curation for protein-protein interactions using BioQRator","volume":"2014","author":"Kwon","year":"2014","journal-title":"Database"},{"key":"key\n\t\t\t\t20180630062754_B7","doi-asserted-by":"crossref","first-page":"bau048","DOI":"10.1093\/database\/bau048","article-title":"Egas: a collaborative and interactive document curation platform","volume":"2014","author":"Campos","year":"2014","journal-title":"Database"},{"key":"key\n\t\t\t\t20180630062754_B8","doi-asserted-by":"crossref","first-page":"baw005","DOI":"10.1093\/database\/baw005","article-title":"EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation","volume":"2016","author":"Pafilis","year":"2016","journal-title":"Database"},{"key":"key\n\t\t\t\t20180630062754_B9","doi-asserted-by":"crossref","first-page":"2285","DOI":"10.1093\/bioinformatics\/bts435","article-title":"MyMiner: a web application for computer-assisted biocuration and text annotation","volume":"28","author":"Salgado","year":"2012","journal-title":"Bioinformatics"},{"issue":"Suppl. 14","key":"key\n\t\t\t\t20180630062754_B10","doi-asserted-by":"crossref","first-page":"S6","DOI":"10.1186\/1471-2105-15-S14-S6","article-title":"OntoGene web services for biomedical text mining","volume":"15","author":"Rinaldi","year":"2014","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20180630062754_B11","doi-asserted-by":"crossref","first-page":"W518","DOI":"10.1093\/nar\/gkt441","article-title":"PubTator: a web-based text mining tool for assisting biocuration","volume":"41","author":"Wei","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630062754_B12","doi-asserted-by":"crossref","first-page":"bau033","DOI":"10.1093\/database\/bau033","article-title":"tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles","volume":"2014","author":"Cejuela","year":"2014","journal-title":"Database"},{"key":"key\n\t\t\t\t20180630062754_B13","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1093\/bib\/bbs084","article-title":"A survey on annotation tools for the biomedical literature","volume":"15","author":"Neves","year":"2014","journal-title":"Brief. Bioinform."},{"key":"key\n\t\t\t\t20180630062754_B14","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1093\/bib\/6.4.357","article-title":"What makes a gene name? Named entity recognition in the biomedical literature","volume":"6","author":"Leser","year":"2005","journal-title":"Brief. Bioinform."},{"volume-title":"Biomedical Named Entity Recognition: a Survey of Machine-Learning Tools","year":"2012","author":"Campos","key":"key\n\t\t\t\t20180630062754_B15"},{"key":"key\n\t\t\t\t20180630062754_B16","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1186\/1758-2946-6-17","article-title":"Chemical named entities recognition: a review on approaches and applications","volume":"6","author":"Eltyeb","year":"2014","journal-title":"J. Cheminform."},{"key":"key\n\t\t\t\t20180630062754_B17","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.jbi.2013.12.006","article-title":"NCBI disease corpus: a resource for disease name recognition and concept normalization","volume":"47","author":"Dogan","year":"2014","journal-title":"J. Biomed. Inform."},{"key":"key\n\t\t\t\t20180630062754_B18","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1007\/s40708-016-0036-4","article-title":"An adaptive annotation approach for biomedical entity and relation recognition","volume":"3","author":"Yimam","year":"2016","journal-title":"Brain Inform."},{"key":"key\n\t\t\t\t20180630062754_B19","doi-asserted-by":"crossref","first-page":"bat064","DOI":"10.1093\/database\/bat064","article-title":"BioC: a minimalist approach to interoperability for biomedical text processing","volume":"2013","author":"Comeau","year":"2013","journal-title":"Database"},{"key":"key\n\t\t\t\t20180630062754_B20","doi-asserted-by":"crossref","first-page":"2839","DOI":"10.1093\/bioinformatics\/btw343","article-title":"TaggerOne: joint named entity recognition and normalization with semi-Markov Models","volume":"32","author":"Leaman","year":"2016","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180630062754_B21","doi-asserted-by":"crossref","first-page":"918710","DOI":"10.1155\/2015\/918710","article-title":"GNormPlus: an integrative approach for tagging genes, gene families, and protein domains","volume":"2015","author":"Wei","year":"2015","journal-title":"Biomed Res. Int."},{"key":"key\n\t\t\t\t20180630062754_B22","doi-asserted-by":"crossref","first-page":"80","DOI":"10.1093\/bioinformatics\/btx541","article-title":"tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine","volume":"34","author":"Wei","year":"2018","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180630062754_B23","doi-asserted-by":"crossref","DOI":"10.1017\/CBO9780511800191","volume-title":"Advanced Data Structures","author":"Brass","year":"2008"},{"key":"key\n\t\t\t\t20180630062754_B24","doi-asserted-by":"crossref","first-page":"e38460","DOI":"10.1371\/journal.pone.0038460","article-title":"SR4GN: a species recognition software tool for gene normalization","volume":"7","author":"Wei","year":"2012","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20180630062754_B25","doi-asserted-by":"crossref","first-page":"baw106","DOI":"10.1093\/database\/baw106","article-title":"BioC viewer: a web-based tool for displaying and merging annotations in BioC","volume":"2016","author":"Shin","year":"2016","journal-title":"Database"},{"key":"key\n\t\t\t\t20180630062754_B26","doi-asserted-by":"crossref","first-page":"baw068","DOI":"10.1093\/database\/baw068","article-title":"BioCreative V CDR task corpus: a resource for chemical disease relation extraction","volume":"2016","author":"Li","year":"2016","journal-title":"Database"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/46\/W1\/W523\/25110520\/gky428.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,10,17]],"date-time":"2019-10-17T13:47:52Z","timestamp":1571320072000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article\/46\/W1\/W523\/4999245"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,5,18]]},"references-count":26,"journal-issue":{"issue":"W1","published-online":{"date-parts":[[2018,5,18]]},"published-print":{"date-parts":[[2018,7,2]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gky428","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"type":"print","value":"0305-1048"},{"type":"electronic","value":"1362-4962"}],"subject":[],"published-other":{"date-parts":[[2018,7,2]]},"published":{"date-parts":[[2018,5,18]]}}}