{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,15]],"date-time":"2026-04-15T07:38:09Z","timestamp":1776238689174,"version":"3.50.1"},"reference-count":20,"publisher":"Oxford University Press (OUP)","issue":"W1","license":[{"start":{"date-parts":[[2018,6,14]],"date-time":"2018-06-14T00:00:00Z","timestamp":1528934400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000011","name":"Howard Hughes Medical Institute","doi-asserted-by":"publisher","award":["R01 HG009116"],"award-info":[{"award-number":["R01 HG009116"]}],"id":[{"id":"10.13039\/100000011","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,7,2]]},"DOI":"10.1093\/nar\/gky448","type":"journal-article","created":{"date-parts":[[2018,6,12]],"date-time":"2018-06-12T07:09:29Z","timestamp":1528787369000},"page":"W200-W204","source":"Crossref","is-referenced-by-count":2298,"title":["HMMER web server: 2018 update"],"prefix":"10.1093","volume":"46","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4208-4102","authenticated-orcid":false,"given":"Simon C","family":"Potter","sequence":"first","affiliation":[{"name":"EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Aur\u00e9lien","family":"Luciani","sequence":"additional","affiliation":[{"name":"EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6676-4706","authenticated-orcid":false,"given":"Sean R","family":"Eddy","sequence":"additional","affiliation":[{"name":"Howard Hughes Medical Institute, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA"}]},{"given":"Youngmi","family":"Park","sequence":"additional","affiliation":[{"name":"EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Rodrigo","family":"Lopez","sequence":"additional","affiliation":[{"name":"EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8626-2148","authenticated-orcid":false,"given":"Robert D","family":"Finn","sequence":"additional","affiliation":[{"name":"EMBL-EBI European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]}],"member":"286","published-online":{"date-parts":[[2018,6,14]]},"reference":[{"key":"key\n\t\t\t\t20180630070750_B1","first-page":"755","article-title":"Profile hidden Markov models","volume":"14","author":"Eddy","year":"1998","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180630070750_B2","first-page":"D279","article-title":"The Pfam protein families database: towards a more sustainable future","volume":"44","author":"Finn","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B3","first-page":"e1002195","article-title":"Accelerated profile HMM searches","volume":"7","author":"Eddy","year":"2011","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20180630070750_B4","first-page":"W29","article-title":"HMMER web server: interactive sequence similarity searching","volume":"39","author":"Finn","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B5","first-page":"W30","article-title":"HMMER web server: 2015 update","volume":"43","author":"Finn","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B6","first-page":"3.15.1","article-title":"The HMMER Web server for protein sequence similarity search","volume":"60","author":"Prakash","year":"2017","journal-title":"Curr. Protoc. Bioinformatics"},{"key":"key\n\t\t\t\t20180630070750_B7","first-page":"W545","article-title":"The EBI search engine: EBI search as a service-making biological data accessible for all","volume":"45","author":"Park","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B8","first-page":"D190","article-title":"InterPro in 2017-beyond protein family and domain annotations","volume":"45","author":"Finn","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B9","first-page":"298","article-title":"Predicting active site residue annotations in the Pfam database","volume":"8","author":"Mistry","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20180630070750_B10","first-page":"D726","article-title":"EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies","volume":"46","author":"Mitchell","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B11","first-page":"2699","article-title":"UniProt: the universal protein knowledgebase","volume":"46","author":"The UniProt Consortium","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B12","first-page":"e18910","article-title":"Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation","volume":"6","author":"Chen","year":"2011","journal-title":"PLoS ONE"},{"key":"key\n\t\t\t\t20180630070750_B13","first-page":"D754","article-title":"Ensembl 2018","volume":"46","author":"Zerbino","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B14","first-page":"D802","article-title":"Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species","volume":"46","author":"Kersey","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B15","first-page":"D624","article-title":"The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database","volume":"46","author":"Rawlings","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B16","first-page":"D289","article-title":"CATH: an expanded resource to predict protein function through structure and sequence","volume":"45","author":"Dawson","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B17","first-page":"D387","article-title":"TIGRFAMs and genome properties in 2013","volume":"41","author":"Haft","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B18","first-page":"D227","article-title":"The SUPERFAMILY 1.75 database in 2014: a doubling of data","volume":"43","author":"Oates","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B19","first-page":"D112","article-title":"PIRSF: family classification system at the Protein Information Resource","volume":"32","author":"Wu","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180630070750_B20","first-page":"D922","article-title":"TreeFam v9: a new website, more species and orthology-on-the-fly","volume":"42","author":"Schreiber","year":"2014","journal-title":"Nucleic Acids Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/46\/W1\/W200\/25110422\/gky448.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,6,30]],"date-time":"2018-06-30T07:08:11Z","timestamp":1530342491000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article\/46\/W1\/W200\/5037715"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,6,14]]},"references-count":20,"journal-issue":{"issue":"W1","published-online":{"date-parts":[[2018,6,14]]},"published-print":{"date-parts":[[2018,7,2]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gky448","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2018,7,2]]},"published":{"date-parts":[[2018,6,14]]}}}