{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,3]],"date-time":"2026-06-03T02:54:19Z","timestamp":1780455259839,"version":"3.54.1"},"reference-count":44,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2018,10,17]],"date-time":"2018-10-17T00:00:00Z","timestamp":1539734400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100002367","name":"Chinese Academy of Sciences","doi-asserted-by":"publisher","award":["XDA19050302"],"award-info":[{"award-number":["XDA19050302"]}],"id":[{"id":"10.13039\/501100002367","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002367","name":"Chinese Academy of Sciences","doi-asserted-by":"publisher","award":["XDB13040500"],"award-info":[{"award-number":["XDB13040500"]}],"id":[{"id":"10.13039\/501100002367","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"crossref","award":["2017YFC0907502"],"award-info":[{"award-number":["2017YFC0907502"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"crossref","award":["2015AA020108"],"award-info":[{"award-number":["2015AA020108"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100002367","name":"Chinese Academy of Sciences","doi-asserted-by":"publisher","award":["XXH13505-05"],"award-info":[{"award-number":["XXH13505-05"]}],"id":[{"id":"10.13039\/501100002367","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002367","name":"Chinese Academy of Sciences","doi-asserted-by":"publisher","award":["153F11KYSB20160008"],"award-info":[{"award-number":["153F11KYSB20160008"]}],"id":[{"id":"10.13039\/501100002367","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31200978"],"award-info":[{"award-number":["31200978"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004052","name":"King Abdullah University of Science and Technology","doi-asserted-by":"publisher","award":["BAS\/1\/1606-01-01"],"award-info":[{"award-number":["BAS\/1\/1606-01-01"]}],"id":[{"id":"10.13039\/501100004052","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,1,8]]},"DOI":"10.1093\/nar\/gky960","type":"journal-article","created":{"date-parts":[[2018,10,10]],"date-time":"2018-10-10T21:03:22Z","timestamp":1539205402000},"page":"D128-D134","source":"Crossref","is-referenced-by-count":210,"title":["LncBook: a curated knowledgebase of human long non-coding RNAs"],"prefix":"10.1093","volume":"47","author":[{"given":"Lina","family":"Ma","sequence":"first","affiliation":[{"name":"BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiabao","family":"Cao","sequence":"additional","affiliation":[{"name":"BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"University of Chinese Academy of Sciences, Beijing 100049, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lin","family":"Liu","sequence":"additional","affiliation":[{"name":"BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"University of Chinese Academy of Sciences, Beijing 100049, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qiang","family":"Du","sequence":"additional","affiliation":[{"name":"Anhui University of Technology, Maanshan 243032, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhao","family":"Li","sequence":"additional","affiliation":[{"name":"BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"University of Chinese Academy of Sciences, Beijing 100049, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dong","family":"Zou","sequence":"additional","affiliation":[{"name":"BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5435-4750","authenticated-orcid":false,"given":"Vladimir B","family":"Bajic","sequence":"additional","affiliation":[{"name":"King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Thuwal 23955-6900, Kingdom of Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhang","family":"Zhang","sequence":"additional","affiliation":[{"name":"BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China"},{"name":"University of Chinese Academy of Sciences, Beijing 100049, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2018,10,17]]},"reference":[{"key":"key\n\t\t\t\t2019013104092463100_B1","doi-asserted-by":"crossref","first-page":"925","DOI":"10.4161\/rna.24604","article-title":"On the classification of long non-coding RNAs","volume":"10","author":"Ma","year":"2013","journal-title":"RNA Biol."},{"key":"key\n\t\t\t\t2019013104092463100_B2","doi-asserted-by":"crossref","first-page":"D168","DOI":"10.1093\/nar\/gku988","article-title":"lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs","volume":"43","author":"Quek","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B3","doi-asserted-by":"crossref","first-page":"963","DOI":"10.1080\/15476286.2017.1312243","article-title":"DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining","volume":"14","author":"Salhi","year":"2017","journal-title":"RNA Biol."},{"key":"key\n\t\t\t\t2019013104092463100_B4","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1016\/j.gpb.2016.12.005","article-title":"Transcriptional and Post-transcriptional gene regulation by long Non-coding RNA","volume":"15","author":"Dykes","year":"2017","journal-title":"Genomics Proteomics Bioinformatics"},{"key":"key\n\t\t\t\t2019013104092463100_B5","doi-asserted-by":"crossref","first-page":"aah7111","DOI":"10.1126\/science.aah7111","article-title":"CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells","volume":"355","author":"Liu","year":"2017","journal-title":"Science"},{"key":"key\n\t\t\t\t2019013104092463100_B6","doi-asserted-by":"crossref","first-page":"D983","DOI":"10.1093\/nar\/gks1099","article-title":"LncRNADisease: a database for long-non-coding RNA-associated diseases","volume":"41","author":"Chen","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B7","doi-asserted-by":"crossref","first-page":"D980","DOI":"10.1093\/nar\/gkv1094","article-title":"Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers","volume":"44","author":"Ning","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B8","first-page":"558","article-title":"Long non-coding RNAs and complex diseases: from experimental results to computational models","volume":"18","author":"Chen","year":"2017","journal-title":"Brief. Bioinform."},{"key":"key\n\t\t\t\t2019013104092463100_B9","doi-asserted-by":"crossref","first-page":"D187","DOI":"10.1093\/nar\/gku1167","article-title":"LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs","volume":"43","author":"Ma","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B10","doi-asserted-by":"crossref","first-page":"D174","DOI":"10.1093\/nar\/gku1060","article-title":"An update on LNCipedia: a database for annotated human lncRNA sequences","volume":"43","author":"Volders","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B11","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1038\/ng.3192","article-title":"The landscape of long noncoding RNAs in the human transcriptome","volume":"47","author":"Iyer","year":"2015","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t2019013104092463100_B12","doi-asserted-by":"crossref","first-page":"D308","DOI":"10.1093\/nar\/gkx1107","article-title":"NONCODEV5: a comprehensive annotation database for long non-coding RNAs","volume":"46","author":"Fang","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B13","doi-asserted-by":"crossref","first-page":"1915","DOI":"10.1101\/gad.17446611","article-title":"Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses","volume":"25","author":"Cabili","year":"2011","journal-title":"Genes Dev."},{"key":"key\n\t\t\t\t2019013104092463100_B14","doi-asserted-by":"crossref","first-page":"1775","DOI":"10.1101\/gr.132159.111","article-title":"The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression","volume":"22","author":"Derrien","year":"2012","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t2019013104092463100_B15","first-page":"2838","article-title":"FARNA: knowledgebase of inferred functions of non-coding RNA transcripts","volume":"45","author":"Alam","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B16","doi-asserted-by":"crossref","first-page":"1927","DOI":"10.1182\/blood-2013-12-544494","article-title":"Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development","volume":"123","author":"Paralkar","year":"2014","journal-title":"Blood"},{"key":"key\n\t\t\t\t2019013104092463100_B17","doi-asserted-by":"crossref","first-page":"1110","DOI":"10.1016\/j.celrep.2015.04.023","article-title":"Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species","volume":"11","author":"Hezroni","year":"2015","journal-title":"Cell Rep."},{"key":"key\n\t\t\t\t2019013104092463100_B18","doi-asserted-by":"crossref","first-page":"e8","DOI":"10.1093\/pcp\/pcv201","article-title":"CANTATAdb: a collection of plant long Non-Coding RNAs","volume":"57","author":"Szczesniak","year":"2016","journal-title":"Plant. Cell Physiol."},{"key":"key\n\t\t\t\t2019013104092463100_B19","doi-asserted-by":"crossref","first-page":"D128","DOI":"10.1093\/nar\/gkw1008","article-title":"RNAcentral: a comprehensive database of non-coding RNA sequences","volume":"45","author":"The RNAcentral Consortium","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B20","doi-asserted-by":"crossref","first-page":"D100","DOI":"10.1093\/nar\/gkx677","article-title":"EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments","volume":"46","author":"Zhou","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B21","doi-asserted-by":"crossref","first-page":"D92","DOI":"10.1093\/nar\/gkt1248","article-title":"starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data","volume":"42","author":"Li","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B22","doi-asserted-by":"crossref","first-page":"D231","DOI":"10.1093\/nar\/gkv1270","article-title":"DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts","volume":"44","author":"Paraskevopoulou","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B23","doi-asserted-by":"crossref","first-page":"D276","DOI":"10.1093\/nar\/gkx1004","article-title":"lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs","volume":"46","author":"Miao","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B24","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1038\/s41576-018-0017-y","article-title":"Towards a complete map of the human long non-coding RNA transcriptome","volume":"19","author":"Uszczynska-Ratajczak","year":"2018","journal-title":"Nat. Rev. Genet."},{"key":"key\n\t\t\t\t2019013104092463100_B25","doi-asserted-by":"crossref","first-page":"D18","DOI":"10.1093\/nar\/gkw1060","article-title":"The BIG Data Center: from deposition to integration to translation","volume":"45","author":"BIG Data Center Members","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B26","doi-asserted-by":"crossref","first-page":"D14","DOI":"10.1093\/nar\/gkx897","article-title":"Database resources of the BIG data center in 2018","volume":"46","author":"BIG Data Center Members","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B27","doi-asserted-by":"crossref","first-page":"562","DOI":"10.1038\/nprot.2012.016","article-title":"Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks","volume":"7","author":"Trapnell","year":"2012","journal-title":"Nat. Protoc."},{"key":"key\n\t\t\t\t2019013104092463100_B28","doi-asserted-by":"crossref","first-page":"e74","DOI":"10.1093\/nar\/gkt006","article-title":"CPAT: coding-potential assessment tool using an alignment-free logistic regression model","volume":"41","author":"Wang","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B29","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1186\/1471-2105-15-311","article-title":"PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme","volume":"15","author":"Li","year":"2014","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t2019013104092463100_B30","doi-asserted-by":"crossref","first-page":"1260419","DOI":"10.1126\/science.1260419","article-title":"Proteomics. Tissue-based map of the human proteome","volume":"347","author":"Uhlen","year":"2015","journal-title":"Science"},{"key":"key\n\t\t\t\t2019013104092463100_B31","doi-asserted-by":"crossref","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: a flexible trimmer for Illumina sequence data","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019013104092463100_B32","doi-asserted-by":"crossref","first-page":"1650","DOI":"10.1038\/nprot.2016.095","article-title":"Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown","volume":"11","author":"Pertea","year":"2016","journal-title":"Nat. Protoc."},{"key":"key\n\t\t\t\t2019013104092463100_B33","doi-asserted-by":"crossref","first-page":"648","DOI":"10.1126\/science.1262110","article-title":"Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans","volume":"348","author":"The GTEx Consortium","year":"2015","journal-title":"Science"},{"key":"key\n\t\t\t\t2019013104092463100_B34","doi-asserted-by":"crossref","first-page":"650","DOI":"10.1093\/bioinformatics\/bti042","article-title":"Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification","volume":"21","author":"Yanai","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019013104092463100_B35","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1093\/nar\/29.1.308","article-title":"dbSNP: the NCBI database of genetic variation","volume":"29","author":"Sherry","year":"2001","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B36","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1038\/nature09534","article-title":"A map of human genome variation from population-scale sequencing","volume":"467","author":"Abecasis","year":"2010","journal-title":"Nature"},{"key":"key\n\t\t\t\t2019013104092463100_B37","doi-asserted-by":"crossref","first-page":"D862","DOI":"10.1093\/nar\/gkv1222","article-title":"ClinVar: public archive of interpretations of clinically relevant variants","volume":"44","author":"Landrum","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B38","doi-asserted-by":"crossref","first-page":"D777","DOI":"10.1093\/nar\/gkw1121","article-title":"COSMIC: somatic cancer genetics at high-resolution","volume":"45","author":"Forbes","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B39","doi-asserted-by":"crossref","first-page":"e164","DOI":"10.1093\/nar\/gkq603","article-title":"ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data","volume":"38","author":"Wang","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B40","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1016\/j.cell.2004.12.035","article-title":"Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets","volume":"120","author":"Lewis","year":"2005","journal-title":"Cell"},{"key":"key\n\t\t\t\t2019013104092463100_B41","doi-asserted-by":"crossref","first-page":"D149","DOI":"10.1093\/nar\/gkm995","article-title":"The microRNA.org resource: targets and expression","volume":"36","author":"Betel","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B42","doi-asserted-by":"crossref","first-page":"D1070","DOI":"10.1093\/nar\/gkt1023","article-title":"HMDD v2.0: a database for experimentally supported human microRNA and disease associations","volume":"42","author":"Li","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019013104092463100_B43","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1038\/nature21374","article-title":"An atlas of human long non-coding RNAs with accurate 5\u2032 ends","volume":"543","author":"Hon","year":"2017","journal-title":"Nature"},{"key":"key\n\t\t\t\t2019013104092463100_B44","doi-asserted-by":"crossref","first-page":"1050","DOI":"10.1101\/gr.214288.116","article-title":"High-confidence coding and noncoding transcriptome maps","volume":"27","author":"You","year":"2017","journal-title":"Genome Res."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/47\/D1\/D128\/27661126\/gky960.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,20]],"date-time":"2020-05-20T06:43:29Z","timestamp":1589957009000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article\/47\/D1\/D128\/5133669"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,10,17]]},"references-count":44,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2018,10,17]]},"published-print":{"date-parts":[[2019,1,8]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gky960","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2019,1,8]]},"published":{"date-parts":[[2018,10,17]]}}}