{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,30]],"date-time":"2025-10-30T22:40:37Z","timestamp":1761864037681,"version":"3.41.2"},"reference-count":15,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2019,11,13]],"date-time":"2019-11-13T00:00:00Z","timestamp":1573603200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100013060","name":"European Molecular Biology Laboratory","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100013060","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100010661","name":"Horizon 2020","doi-asserted-by":"publisher","award":["643476","734548","654182","654008","676559","825746","824110","817923","817998"],"award-info":[{"award-number":["643476","734548","654182","654008","676559","825746","824110","817923","817998"]}],"id":[{"id":"10.13039\/100010661","id-type":"DOI","asserted-by":"publisher"}]},{"name":"The Biological Sciences Research Council","award":["BB\/N019199\/1","BB\/PO24459\/1","BN\/N018877\/1","BB\/N018354\/1","BB\/R015228\/1"],"award-info":[{"award-number":["BB\/N019199\/1","BB\/PO24459\/1","BN\/N018877\/1","BB\/N018354\/1","BB\/R015228\/1"]}]},{"DOI":"10.13039\/100000936","name":"Gordon and Betty Moore Foundation","doi-asserted-by":"publisher","award":["MOORE-2527"],"award-info":[{"award-number":["MOORE-2527"]}],"id":[{"id":"10.13039\/100000936","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100004440","name":"Wellcome Trust","doi-asserted-by":"publisher","award":["WT098503\/D\/12"],"award-info":[{"award-number":["WT098503\/D\/12"]}],"id":[{"id":"10.13039\/100004440","id-type":"DOI","asserted-by":"publisher"}]},{"name":"ELIXIR"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>The European Nucleotide Archive (ENA,\u00a0https:\/\/www.ebi.ac.uk\/ena) at the European Molecular Biology Laboratory\u2019s European Bioinformatics Institute provides open and freely available data deposition and access services across the spectrum of nucleotide sequence data types. Making the world\u2019s public sequencing datasets available to the scientific community, the ENA represents a globally comprehensive nucleotide sequence resource. Here, we outline ENA services and content in 2019 and provide an insight into selected key areas of development in this period.<\/jats:p>","DOI":"10.1093\/nar\/gkz1063","type":"journal-article","created":{"date-parts":[[2019,11,7]],"date-time":"2019-11-07T15:10:52Z","timestamp":1573139452000},"source":"Crossref","is-referenced-by-count":36,"title":["The European Nucleotide Archive in 2019"],"prefix":"10.1093","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6534-7425","authenticated-orcid":false,"given":"Clara","family":"Amid","sequence":"first","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Blaise T F","family":"Alako","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Vishnukumar","family":"Balavenkataraman\u00a0Kadhirvelu","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2513-5396","authenticated-orcid":false,"given":"Tony","family":"Burdett","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Josephine","family":"Burgin","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Jun","family":"Fan","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4007-2899","authenticated-orcid":false,"given":"Peter W","family":"Harrison","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Sam","family":"Holt","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Abdulrahman","family":"Hussein","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Eugene","family":"Ivanov","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Suran","family":"Jayathilaka","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Simon","family":"Kay","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Thomas","family":"Keane","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2639-7187","authenticated-orcid":false,"given":"Rasko","family":"Leinonen","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Xin","family":"Liu","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Josue","family":"Martinez-Villacorta","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Annalisa","family":"Milano","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Amir","family":"Pakseresht","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Nadim","family":"Rahman","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Jeena","family":"Rajan","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Kethi","family":"Reddy","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Edward","family":"Richards","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Dmitriy","family":"Smirnov","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Alexey","family":"Sokolov","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Senthilnathan","family":"Vijayaraja","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7954-7057","authenticated-orcid":false,"given":"Guy","family":"Cochrane","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]}],"member":"286","published-online":{"date-parts":[[2019,11,13]]},"reference":[{"key":"2019111316321466400_B1","doi-asserted-by":"crossref","first-page":"D48","DOI":"10.1093\/nar\/gkx1097","article-title":"The International Nucleotide Sequence Database Collaboration","volume":"46","author":"Karsch-Mizrachi","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"2019111316321466400_B2","doi-asserted-by":"crossref","first-page":"160018","DOI":"10.1038\/sdata.2016.18","article-title":"The FAIR Guiding Principles for scientific data management and stewardship","volume":"3","author":"Wilkinson","year":"2016","journal-title":"Sci. Data"},{"key":"2019111316321466400_B3","doi-asserted-by":"crossref","first-page":"D84","DOI":"10.1093\/nar\/gky1078","article-title":"The European Nucleotide Archive in 2018","volume":"47","author":"Harrison","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"2019111316321466400_B4","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1038\/nbt.3893","article-title":"Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea","volume":"35","author":"Bowers","year":"2017","journal-title":"Nat. Biotechnol."},{"key":"2019111316321466400_B5","doi-asserted-by":"crossref","first-page":"D643","DOI":"10.1093\/nar\/gkt1209","article-title":"The SILVA and \u201cAll-Species Living Tree Project (LTP)\u201d taxonomic frameworks","volume":"42","author":"Yilmaz","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"2019111316321466400_B6","doi-asserted-by":"crossref","first-page":"D127","DOI":"10.1093\/nar\/gkx855","article-title":"ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences","volume":"46","author":"Santamaria","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"2019111316321466400_B7","doi-asserted-by":"crossref","first-page":"D259","DOI":"10.1093\/nar\/gky1022","article-title":"The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications","volume":"47","author":"Nilsson","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"2019111316321466400_B8","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1038\/nbt.4306","article-title":"Minimum Information about an Uncultivated Virus Genome (MIUViG)","volume":"37","author":"Roux","year":"2019","journal-title":"Nat. Biotechnol."},{"key":"2019111316321466400_B9","doi-asserted-by":"crossref","DOI":"10.1101\/555938","article-title":"The COMPARE Data Hubs","author":"Amid","year":"2019"},{"key":"2019111316321466400_B10","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1146\/annurev-animal-020518-114913","article-title":"Functional Annotation of Animal Genomes (FAANG): current achievements and roadmap","volume":"7","author":"Giuffra","year":"2019","journal-title":"Annu. Rev. Anim. Biosci."},{"key":"2019111316321466400_B11","doi-asserted-by":"crossref","first-page":"D726","DOI":"10.1093\/nar\/gkx967","article-title":"EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies","volume":"46","author":"Mitchell","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"2019111316321466400_B12","doi-asserted-by":"crossref","first-page":"370","DOI":"10.1038\/nature22403","article-title":"Common genetic variation drives molecular heterogeneity in human iPSCs","volume":"546","author":"Kilpinen","year":"2017","journal-title":"Nature"},{"key":"2019111316321466400_B13","doi-asserted-by":"crossref","first-page":"170093","DOI":"10.1038\/sdata.2017.93","article-title":"Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition","volume":"4","author":"Alberti","year":"2017","journal-title":"Sci. Data"},{"key":"2019111316321466400_B14","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1186\/s13742-015-0066-5","article-title":"The Ocean Sampling Day Consortium","volume":"4","author":"Kopf","year":"2015","journal-title":"GigaScience"},{"key":"2019111316321466400_B15","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1111\/jeu.12414","article-title":"UniEuk: time to speak a common language in protistology","volume":"64","author":"Berney","year":"2017","journal-title":"J. Eukaryot. Microbiol."}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/advance-article-pdf\/doi\/10.1093\/nar\/gkz1063\/30699232\/gkz1063.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"http:\/\/academic.oup.com\/nar\/advance-article-pdf\/doi\/10.1093\/nar\/gkz1063\/30699232\/gkz1063.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,11,13]],"date-time":"2019-11-13T16:32:27Z","timestamp":1573662747000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/advance-article\/doi\/10.1093\/nar\/gkz1063\/5624970"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,11,13]]},"references-count":15,"URL":"https:\/\/doi.org\/10.1093\/nar\/gkz1063","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"type":"print","value":"0305-1048"},{"type":"electronic","value":"1362-4962"}],"subject":[],"published":{"date-parts":[[2019,11,13]]},"article-number":"gkz1063"}}